Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PABLDZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsRecurrent.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsRecurrent.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsRecurrent.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01D	DNA	EFO	SRS489691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H02	SRX362938		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-04A-01D GS01228-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60302-FS3_L01.bam	SRR1006872	@dbgap@:reads/SRP012000/SRS489691/SRX362938/SRR1006872/SRR1006872.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PABLDZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsPrimary.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsPrimary.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsPrimary.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F02	SRX362937		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-09A-02D GS01228-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60303-FS3_L01.bam	SRR1006879	@dbgap@:reads/SRP012000/SRS489690/SRX362937/SRR1006879/SRR1006879.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PABLDZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsPrimary.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PABLDZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsRecurrent.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsPrimary.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsRecurrent.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsPrimary.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PABLDZ_NormalVsRecurrent.png	4			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PABLDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PABLDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-14A-01D	DNA	EFO	SRS489689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G02	SRX362936		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PABLDZ-14A-01D GS01228-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60304-FS3_L01.bam	SRR1006886	@dbgap@:reads/SRP012000/SRS489689/SRX362936/SRR1006886/SRR1006886.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PADYIR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADYIR_NormalVsPrimary.png	4			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADYIR_NormalVsPrimary.png	4			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADYIR_NormalVsPrimary.png	4			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A05	SRX445554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-09A-01D GS01228-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59967-FS3-L01.bam	SRR1138376	@dbgap@:reads/SRP012000/SRS540695/SRX445554/SRR1138376/SRR1138376.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PADYIR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADYIR_NormalVsPrimary.png	4			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADYIR_NormalVsPrimary.png	4			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADYIR_NormalVsPrimary.png	4			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADYIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADYIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B05	SRX445553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADYIR-14A-01D GS01228-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59883-FS3-L01.bam	SRR1138383	@dbgap@:reads/SRP012000/SRS540696/SRX445553/SRR1138383/SRR1138383.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PADZCG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsRecurrent.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsRecurrent.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsRecurrent.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01D	DNA	EFO	SRS489657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F05	SRX362904		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-04A-01D GS01228-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60216-FS3_L01.bam	SRR1006644	@dbgap@:reads/SRP012000/SRS489657/SRX362904/SRR1006644/SRR1006644.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PADZCG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsPrimary.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsPrimary.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsPrimary.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D05	SRX362905		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-09A-01D GS01228-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60217-FS3_L01.bam	SRR1006637	@dbgap@:reads/SRP012000/SRS489658/SRX362905/SRR1006637/SRR1006637.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PADZCG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsPrimary.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PADZCG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsRecurrent.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsPrimary.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsRecurrent.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsPrimary.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PADZCG_NormalVsRecurrent.png	4			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PADZCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PADZCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E05	SRX362903		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PADZCG-14A-01D GS01228-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60218-FS3_L01.bam	SRR1006652	@dbgap@:reads/SRP012000/SRS489656/SRX362903/SRR1006652/SRR1006652.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEAKL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEAKL_NormalVsPrimary.png	4			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEAKL_NormalVsPrimary.png	4			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEAKL_NormalVsPrimary.png	4			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-01D	DNA	EFO	SRS118037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F08	SRX129018		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-09A-01D GS00660-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17797-FS3_L01.bam	SRR444339	@dbgap@:reads/SRP012000/SRS118037/SRX129018/SRR444339/SRR444339.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEAKL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEAKL_NormalVsPrimary.png	4			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEAKL_NormalVsPrimary.png	4			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEAKL_NormalVsPrimary.png	4			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEAKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEAKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-10A-01D	DNA	EFO	SRS118038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G08	SRX129017		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEAKL-10A-01D GS00660-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17796-FS3_L01.bam	SRR444347	@dbgap@:reads/SRP012000/SRS118038/SRX129017/SRR444347/SRR444347.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAECCE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsRecurrent.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsRecurrent.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsRecurrent.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01D	DNA	EFO	SRS489674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A06	SRX362921		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-04A-01D GS01228-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60296-FS3_L01.bam	SRR1006753	@dbgap@:reads/SRP012000/SRS489674/SRX362921/SRR1006753/SRR1006753.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAECCE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsPrimary.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsPrimary.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsPrimary.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G05	SRX362920		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-09A-01D GS01228-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60297-FS3_L01.bam	SRR1006760	@dbgap@:reads/SRP012000/SRS489673/SRX362920/SRR1006760/SRR1006760.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAECCE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsPrimary.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAECCE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsRecurrent.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsPrimary.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsRecurrent.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsPrimary.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAECCE_NormalVsRecurrent.png	4			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAECCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAECCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-14A-01D	DNA	EFO	SRS489672	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H05	SRX362919		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAECCE-14A-01D GS01228-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60298-FS3_L01.bam	SRR1006767	@dbgap@:reads/SRP012000/SRS489672/SRX362919/SRR1006767/SRR1006767.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEDKB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsRecurrent.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsRecurrent.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsRecurrent.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D03	SRX362935		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-04A-01D GS01228-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60299-FS3_L01.bam	SRR1006851	@dbgap@:reads/SRP012000/SRS489688/SRX362935/SRR1006851/SRR1006851.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEDKB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsPrimary.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsPrimary.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsPrimary.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A03	SRX362934		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-09A-01D GS01228-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60300-FS3_L01.bam	SRR1006858	@dbgap@:reads/SRP012000/SRS489687/SRX362934/SRR1006858/SRR1006858.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEDKB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsPrimary.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEDKB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsRecurrent.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsPrimary.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsRecurrent.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsPrimary.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEDKB_NormalVsRecurrent.png	4			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEDKB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEDKB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B03	SRX362933		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEDKB-10A-01D GS01228-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60301-FS3_L01.bam	SRR1006865	@dbgap@:reads/SRP012000/SRS489686/SRX362933/SRR1006865/SRR1006865.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEERJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsRecurrent.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsRecurrent.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsRecurrent.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C02	SRX363115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-04A-01D GS01969-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60428-FS3_L08.bam	SRR1008116	@dbgap@:reads/SRP012000/SRS489847/SRX363115/SRR1008116/SRR1008116.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEERJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsPrimary.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsPrimary.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsPrimary.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B02	SRX363114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-09A-01D GS01969-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62248-FS3_L01.bam	SRR1008121	@dbgap@:reads/SRP012000/SRS489846/SRX363114/SRR1008121/SRR1008121.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEERJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsPrimary.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEERJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsRecurrent.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsPrimary.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsRecurrent.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsPrimary.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEERJ_NormalVsRecurrent.png	4			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEERJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEERJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-02D	DNA	EFO	SRS489845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F03	SRX363113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEERJ-14A-02D GS01969-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62249-FS3_L01.bam	SRR1008128	@dbgap@:reads/SRP012000/SRS489845/SRX363113/SRR1008128/SRR1008128.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEFGR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsRecurrent.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsRecurrent.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsRecurrent.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-01D	DNA	EFO	SRS489684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G03	SRX362931		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-04A-01D GS01228-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60223-FS3_L01.bam	SRR1006837	@dbgap@:reads/SRP012000/SRS489684/SRX362931/SRR1006837/SRR1006837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEFGR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsPrimary.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsPrimary.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsPrimary.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E03	SRX362932		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-09A-01D GS01228-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L03.bam	SRR1006830	@dbgap@:reads/SRP012000/SRS489685/SRX362932/SRR1006830/SRR1006830.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEFGR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsPrimary.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEFGR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsRecurrent.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsPrimary.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsRecurrent.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsPrimary.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGR_NormalVsRecurrent.png	4			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F03	SRX362930		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGR-14A-01D GS01228-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60224-FS3_L01.bam	SRR1006844	@dbgap@:reads/SRP012000/SRS489683/SRX362930/SRR1006844/SRR1006844.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEFGT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsRecurrent.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsRecurrent.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsRecurrent.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A04	SRX362901		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-04A-01D GS01228-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60220-FS3_L01.bam	SRR1006623	@dbgap@:reads/SRP012000/SRS489654/SRX362901/SRR1006623/SRR1006623.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEFGT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsPrimary.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsPrimary.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsPrimary.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H03	SRX362902		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-09A-01D GS01228-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60221-FS3_L01.bam	SRR1006616	@dbgap@:reads/SRP012000/SRS489655/SRX362902/SRR1006616/SRR1006616.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEFGT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsPrimary.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEFGT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsRecurrent.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsPrimary.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsRecurrent.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsPrimary.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEFGT_NormalVsRecurrent.png	4			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEFGT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEFGT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B04	SRX362900		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEFGT-14A-01D GS01228-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60222-FS3_L01.bam	SRR1006630	@dbgap@:reads/SRP012000/SRS489653/SRX362900/SRR1006630/SRR1006630.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEIKD_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsRecurrent.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsRecurrent.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsRecurrent.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01D	DNA	EFO	SRS489669	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E04	SRX362915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-04A-01D GS01228-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L01.bam	SRR1006724	@dbgap@:reads/SRP012000/SRS489669/SRX362915/SRR1006724/SRR1006724.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEIKD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsPrimary.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsPrimary.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsPrimary.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C04	SRX362916		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-09A-01D GS01228-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60164-FS3_L01.bam	SRR1006716	@dbgap@:reads/SRP012000/SRS489668/SRX362916/SRR1006716/SRR1006716.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEIKD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsPrimary.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAEIKD_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsRecurrent.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsPrimary.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsRecurrent.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsPrimary.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAEIKD_NormalVsRecurrent.png	4			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAEIKD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAEIKD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D04	SRX362914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAEIKD-14A-01D GS01228-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60219-FS3_L01.bam	SRR1006731	@dbgap@:reads/SRP012000/SRS489667/SRX362914/SRR1006731/SRR1006731.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKERZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsRecurrent.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsRecurrent.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsRecurrent.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01D	DNA	EFO	SRS489677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D06	SRX362924		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-04A-01D GS01228-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59972-FS3_L01.bam	SRR1006774	@dbgap@:reads/SRP012000/SRS489677/SRX362924/SRR1006774/SRR1006774.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKERZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsPrimary.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsPrimary.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsPrimary.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B06	SRX362923		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-09A-01D GS01228-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L03.bam	SRR1006781	@dbgap@:reads/SRP012000/SRS489676/SRX362923/SRR1006781/SRR1006781.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKERZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsPrimary.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKERZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsRecurrent.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsPrimary.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsRecurrent.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsPrimary.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKERZ_NormalVsRecurrent.png	4			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKERZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKERZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-14A-01D	DNA	EFO	SRS489675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C06	SRX362922		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKERZ-14A-01D GS01228-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60215-FS3_L01.bam	SRR1006788	@dbgap@:reads/SRP012000/SRS489675/SRX362922/SRR1006788/SRR1006788.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKIWK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsRecurrent.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsRecurrent.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsRecurrent.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01D	DNA	EFO	SRS489850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E02	SRX363118		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-04A-01D GS01969-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60423-FS3_L01.bam	SRR1008135	@dbgap@:reads/SRP012000/SRS489850/SRX363118/SRR1008135/SRR1008135.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKIWK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsPrimary.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsPrimary.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsPrimary.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D02	SRX363117		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-09A-01D GS01969-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60422-FS3_L01.bam	SRR1008142	@dbgap@:reads/SRP012000/SRS489849/SRX363117/SRR1008142/SRR1008142.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKIWK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsPrimary.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKIWK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsRecurrent.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsPrimary.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsRecurrent.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsPrimary.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIWK_NormalVsRecurrent.png	4			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIWK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIWK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-14A-02D	DNA	EFO	SRS489848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G03	SRX363116		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIWK-14A-02D GS01969-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60424-FS3_L01.bam	SRR1008149	@dbgap@:reads/SRP012000/SRS489848/SRX363116/SRR1008149/SRR1008149.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-03A-01D	DNA	EFO	SRS266083	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-03A-01D A03293 library	PAIRED	GENOMIC	WGS	RANDOM		A03293	SRX100078		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2011-02-07	TARGET-20-PAKIYW-03A-01D A03293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.7.48.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A03293-1..10.bam	SRR351950	@dbgap@:reads/SRP012000/SRS266083/SRX100078/SRR351950/SRR351950.sra	2	NCBI36	bcgsc.ca:Protocol:WGS-VariantCall:01	A03293_10_lanes_dupsFlagged.varFilter.anno1.maf.txt	3						
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKIYW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIYW_NormalVsPrimary.png	4			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIYW_NormalVsPrimary.png	4			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIYW_NormalVsPrimary.png	4			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01D	DNA	EFO	SRS118039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H08	SRX129125		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-09A-01D GS00660-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17705-FS3_L01.bam	SRR444482	@dbgap@:reads/SRP012000/SRS118039/SRX129125/SRR444482/SRR444482.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D A03292 library	PAIRED	GENOMIC	WGS	RANDOM		A03292	SRX100077		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2011-01-20	TARGET-20-PAKIYW-14A-01D A03292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.8.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A03292-1..bam	SRR351940	@dbgap@:reads/SRP012000/SRS266084/SRX100077/SRR351940/SRR351940.sra	2	NCBI36	bcgsc.ca:Protocol:WGS-VariantCall:01	A03292_10_lanes_dupsFlagged.varFilter.anno1.maf.txt	3						
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKIYW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIYW_NormalVsPrimary.png	4			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIYW_NormalVsPrimary.png	4			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKIYW_NormalVsPrimary.png	4			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKIYW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKIYW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	bcgsc.ca:Protocol:DNA-Extraction-Qiagen-AllPrep:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-14A-01D	DNA	EFO	SRS266084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A09	SRX129124		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKIYW-14A-01D GS00660-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17704-FS3_L01.bam	SRR444490	@dbgap@:reads/SRP012000/SRS266084/SRX129124/SRR444490/SRR444490.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKLPD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKLPD_NormalVsPrimary.png	4			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKLPD_NormalVsPrimary.png	4			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKLPD_NormalVsPrimary.png	4			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E06	SRX362961		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-09A-03D GS01228-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60295-FS3_L01.bam	SRR1007041	@dbgap@:reads/SRP012000/SRS489714/SRX362961/SRR1007041/SRR1007041.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKLPD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKLPD_NormalVsPrimary.png	4			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKLPD_NormalVsPrimary.png	4			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKLPD_NormalVsPrimary.png	4			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKLPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKLPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F06	SRX362960		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKLPD-14A-02D GS01228-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59971-FS3_L01.bam	SRR1007048	@dbgap@:reads/SRP012000/SRS489713/SRX362960/SRR1007048/SRR1007048.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKRZG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsRecurrent.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsRecurrent.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsRecurrent.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-01D	DNA	EFO	SRS489697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F02	SRX362944		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-04A-01D GS01950-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60686-FS3_L01.bam	SRR1006928	@dbgap@:reads/SRP012000/SRS489697/SRX362944/SRR1006928/SRR1006928.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKRZG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsPrimary.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsPrimary.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsPrimary.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B09	SRX128797		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-09A-01D GS00660-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17730-FS3_L01.bam	SRR443866	@dbgap@:reads/SRP012000/SRS118041/SRX128797/SRR443866/SRR443866.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKRZG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsPrimary.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKRZG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsRecurrent.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsPrimary.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsRecurrent.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsPrimary.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKRZG_NormalVsRecurrent.png	4			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKRZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKRZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C09	SRX128796		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKRZG-14A-01D GS00660-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17728-FS3_L01.bam	SRR443874	@dbgap@:reads/SRP012000/SRS118042/SRX128796/SRR443874/SRR443874.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKSMZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKSMZ_NormalVsPrimary.png	4			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKSMZ_NormalVsPrimary.png	4			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKSMZ_NormalVsPrimary.png	4			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-01D	DNA	EFO	SRS489747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A03	SRX363011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-03A-01D GS01969-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62158-FS3_L01.bam	SRR1007398	@dbgap@:reads/SRP012000/SRS489747/SRX363011/SRR1007398/SRR1007398.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKSMZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKSMZ_NormalVsPrimary.png	4			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKSMZ_NormalVsPrimary.png	4			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKSMZ_NormalVsPrimary.png	4			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKSMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKSMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B03	SRX363010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKSMZ-10A-01D GS01969-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62159-FS3_L03.bam	SRR1007406	@dbgap@:reads/SRP012000/SRS489746/SRX363010/SRR1007406/SRR1007406.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKTCX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsRecurrent.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsRecurrent.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsRecurrent.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_H02	SRX363147		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-04A-01D GS01984-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63797-FS3_L01.bam	SRR1008349	@dbgap@:reads/SRP012000/SRS489875/SRX363147/SRR1008349/SRR1008349.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKTCX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsPrimary.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsPrimary.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsPrimary.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_G02	SRX363148		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-09A-01D GS01984-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63796-FS3_L01.bam	SRR1008342	@dbgap@:reads/SRP012000/SRS489876/SRX363148/SRR1008342/SRR1008342.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKTCX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsPrimary.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKTCX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsRecurrent.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsPrimary.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsRecurrent.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsPrimary.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKTCX_NormalVsRecurrent.png	4			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKTCX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKTCX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D03	SRX363146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKTCX-14A-01D GS01984-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63795-FS3_L01.bam	SRR1008356	@dbgap@:reads/SRP012000/SRS489874/SRX363146/SRR1008356/SRR1008356.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKVGI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsRecurrent.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsRecurrent.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsRecurrent.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-01D	DNA	EFO	SRS489681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H04	SRX362928		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-04A-01D GS01228-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59882-FS3_L01.bam	SRR1006816	@dbgap@:reads/SRP012000/SRS489681/SRX362928/SRR1006816/SRR1006816.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKVGI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsPrimary.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsPrimary.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsPrimary.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F04	SRX362929		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-09A-01D GS01228-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60162-FS3_L01.bam	SRR1006809	@dbgap@:reads/SRP012000/SRS489682/SRX362929/SRR1006809/SRR1006809.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKVGI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsPrimary.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAKVGI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsRecurrent.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsPrimary.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsRecurrent.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsPrimary.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAKVGI_NormalVsRecurrent.png	4			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAKVGI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAKVGI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-14A-01D	DNA	EFO	SRS489680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G04	SRX362927		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAKVGI-14A-01D GS01228-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60163-FS3_L03.bam	SRR1006823	@dbgap@:reads/SRP012000/SRS489680/SRX362927/SRR1006823/SRR1006823.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PALGKX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsRecurrent.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsRecurrent.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsRecurrent.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01D	DNA	EFO	SRS489808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_B03	SRX363072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-04A-01D GS01984-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63792-FS3_L01.bam	SRR1007831	@dbgap@:reads/SRP012000/SRS489808/SRX363072/SRR1007831/SRR1007831.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PALGKX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsPrimary.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsPrimary.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsPrimary.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_D02	SRX363073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-09A-01D GS01984-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63793-FS3_L01.bam	SRR1007824	@dbgap@:reads/SRP012000/SRS489809/SRX363073/SRR1007824/SRR1007824.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PALGKX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsPrimary.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PALGKX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsRecurrent.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsPrimary.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsRecurrent.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsPrimary.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PALGKX_NormalVsRecurrent.png	4			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PALGKX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PALGKX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_E02	SRX363071		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PALGKX-14A-01D GS01984-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63794-FS3_L01.bam	SRR1007838	@dbgap@:reads/SRP012000/SRS489807/SRX363071/SRR1007838/SRR1007838.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMVKZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsPrimary.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsPrimary.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsPrimary.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03D	DNA	EFO	SRS301009	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A02	SRX172489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-09A-03D GS01041-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48432-FS3_L01.bam	SRR530670	@dbgap@:reads/SRP012000/SRS301009/SRX172489/SRR530670/SRR530670.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMVKZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsPrimary.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsPrimary.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsPrimary.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B02	SRX172488		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-14A-01D GS01041-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48431-FS3_L01.bam	SRR530677	@dbgap@:reads/SRP012000/SRS301010/SRX172488/SRR530677/SRR530677.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.png	4			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMVKZ_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-15A-01D	DNA	EFO	SRS489700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A03	SRX362947		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMVKZ-15A-01D GS01950-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61002-FS3_L01.bam	SRR1006950	@dbgap@:reads/SRP012000/SRS489700/SRX362947/SRR1006950/SRR1006950.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMYAS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsRecurrent.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsRecurrent.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsRecurrent.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F02	SRX121718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-04A-01D GS00747-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34891-FS3_L01.bam	SRR412797	@dbgap@:reads/SRP012000/SRS160273/SRX121718/SRR412797/SRR412797.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMYAS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsPrimary.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsPrimary.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsPrimary.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-02D	DNA	EFO	SRS287475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D02	SRX121719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-09A-02D GS00747-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34872-FS3_L01.bam	SRR412789	@dbgap@:reads/SRP012000/SRS287475/SRX121719/SRR412789/SRR412789.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMYAS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsPrimary.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMYAS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsRecurrent.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsPrimary.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsRecurrent.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsPrimary.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYAS_NormalVsRecurrent.png	4			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYAS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYAS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-02D	DNA	EFO	SRS270637	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E02	SRX121717		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYAS-14A-02D GS00747-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34889-FS3_L01.bam	SRR412805	@dbgap@:reads/SRP012000/SRS270637/SRX121717/SRR412805/SRR412805.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMYGX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYGX_NormalVsPrimary.png	4			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYGX_NormalVsPrimary.png	4			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYGX_NormalVsPrimary.png	4			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03D	DNA	EFO	SRS301011	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C02	SRX176368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-09A-03D GS01041-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48434-FS3_L01.bam	SRR538430	@dbgap@:reads/SRP012000/SRS301011/SRX176368/SRR538430/SRR538430.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMYGX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYGX_NormalVsPrimary.png	4			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYGX_NormalVsPrimary.png	4			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYGX_NormalVsPrimary.png	4			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-02D	DNA	EFO	SRS301012	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D02	SRX176367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYGX-14A-02D GS01041-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48433-FS3_L01.bam	SRR538437	@dbgap@:reads/SRP012000/SRS301012/SRX176367/SRR538437/SRR538437.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMYJX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsRecurrent.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsRecurrent.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsRecurrent.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_B07	SRX149600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-04A-01D GS01004-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44417-FS3_L01.bam	SRR500833	@dbgap@:reads/SRP012000/SRS270638/SRX149600/SRR500833/SRR500833.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMYJX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsPrimary.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsPrimary.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsPrimary.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-02D	DNA	EFO	SRS270639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G07	SRX149601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-09A-02D GS00790-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35132-FS3_L01.bam	SRR500825	@dbgap@:reads/SRP012000/SRS270639/SRX149601/SRR500825/SRR500825.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMYJX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsPrimary.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAMYJX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsRecurrent.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsPrimary.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsRecurrent.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsPrimary.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAMYJX_NormalVsRecurrent.png	4			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAMYJX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAMYJX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B12	SRX149599		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAMYJX-14A-01D GS00790-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37676-FS3_L01.bam	SRR500840	@dbgap@:reads/SRP012000/SRS270640/SRX149599/SRR500840/SRR500840.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANAEV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANAEV_NormalVsPrimary.png	4			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANAEV_NormalVsPrimary.png	4			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANAEV_NormalVsPrimary.png	4			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E02	SRX160084		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-09A-03D GS01041-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48436-FS3_L01.bam	SRR521758	@dbgap@:reads/SRP012000/SRS301013/SRX160084/SRR521758/SRR521758.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANAEV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANAEV_NormalVsPrimary.png	4			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANAEV_NormalVsPrimary.png	4			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANAEV_NormalVsPrimary.png	4			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANAEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANAEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F02	SRX160083		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANAEV-14A-01D GS01041-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48435-FS3_L01.bam	SRR521765	@dbgap@:reads/SRP012000/SRS301014/SRX160083/SRR521765/SRR521765.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANBZH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsPrimary.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsPrimary.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsPrimary.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03D	DNA	EFO	SRS301015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G02	SRX160612		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-09A-03D GS01041-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L03.bam	SRR523682	@dbgap@:reads/SRP012000/SRS301015/SRX160612/SRR523682/SRR523682.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANBZH_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsNormalFibroblast.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANBZH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsPrimary.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsNormalFibroblast.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsPrimary.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsNormalFibroblast.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsPrimary.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-02D	DNA	EFO	SRS301016	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H02	SRX160611		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-14A-02D GS01041-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48437-FS3_L01.bam	SRR523689	@dbgap@:reads/SRP012000/SRS301016/SRX160611/SRR523689/SRR523689.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANBZH_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsNormalFibroblast.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsNormalFibroblast.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANBZH_NormalVsNormalFibroblast.png	4			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANBZH_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANBZH_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-15A-01D	DNA	EFO	SRS489701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B03	SRX362948		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANBZH-15A-01D GS01950-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L01.bam	SRR1006957	@dbgap@:reads/SRP012000/SRS489701/SRX362948/SRR1006957/SRR1006957.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANCSC_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsRecurrent.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsRecurrent.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsRecurrent.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-01D	DNA	EFO	SRS489693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_G02	SRX362940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-04A-01D GS01950-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60685-FS3_L01.bam	SRR1006901	@dbgap@:reads/SRP012000/SRS489693/SRX362940/SRR1006901/SRR1006901.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANCSC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsPrimary.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsPrimary.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsPrimary.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-01D	DNA	EFO	SRS118043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D09	SRX129585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-09A-01D GS00660-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17726-FS3_L01.bam	SRR445000	@dbgap@:reads/SRP012000/SRS118043/SRX129585/SRR445000/SRR445000.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANCSC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsPrimary.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANCSC_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsRecurrent.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsPrimary.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsRecurrent.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsPrimary.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANCSC_NormalVsRecurrent.png	4			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANCSC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANCSC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E09	SRX129584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANCSC-14A-01D GS00660-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17664-FS3_L01.bam	SRR445008	@dbgap@:reads/SRP012000/SRS118044/SRX129584/SRR445008/SRR445008.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANDDC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDDC_NormalVsPrimary.png	4			
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDDC_NormalVsPrimary.png	4			
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDDC_NormalVsPrimary.png	4			
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-09A-03D	DNA	EFO	SRS301017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A03	SRX171698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-09A-03D GS01041-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48764-FS3_L01.bam	SRR529871	@dbgap@:reads/SRP012000/SRS301017/SRX171698/SRR529871/SRR529871.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANDDC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDDC_NormalVsPrimary.png	4			
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDDC_NormalVsPrimary.png	4			
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDDC_NormalVsPrimary.png	4			
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANDDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDDC-14A-01D	DNA	EFO	SRS301018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B03	SRX171697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDDC-14A-01D GS01041-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48438-FS3_L01.bam	SRR529878	@dbgap@:reads/SRP012000/SRS301018/SRX171697/SRR529878/SRR529878.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANDER_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDER_NormalVsPrimary.png	4			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDER_NormalVsPrimary.png	4			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDER_NormalVsPrimary.png	4			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-09A-02D GS01228-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H06	SRX362963		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-09A-02D GS01228-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59969-FS3_L01.bam	SRR1007055	@dbgap@:reads/SRP012000/SRS489716/SRX362963/SRR1007055/SRR1007055.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANDER_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDER_NormalVsPrimary.png	4			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDER_NormalVsPrimary.png	4			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDER_NormalVsPrimary.png	4			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDER-14A-01D GS01228-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A07	SRX362962		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDER-14A-01D GS01228-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60131-FS3_L01.bam	SRR1007062	@dbgap@:reads/SRP012000/SRS489715/SRX362962/SRR1007062/SRR1007062.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANDIX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsRecurrent.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsRecurrent.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsRecurrent.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-01D	DNA	EFO	SRS270641	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B09	SRX122232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-04A-01D GS00792-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36061-FS3_L01.bam	SRR413887	@dbgap@:reads/SRP012000/SRS270641/SRX122232/SRR413887/SRR413887.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANDIX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsPrimary.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsPrimary.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsPrimary.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C11	SRX122231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-09A-02D GS00790-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36063-FS3_L01.bam	SRR413895	@dbgap@:reads/SRP012000/SRS270642/SRX122231/SRR413895/SRR413895.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANDIX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsPrimary.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANDIX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsRecurrent.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsPrimary.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsRecurrent.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsPrimary.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANDIX_NormalVsRecurrent.png	4			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANDIX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANDIX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-02D	DNA	EFO	SRS270643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G11	SRX122230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANDIX-14A-02D GS00792-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33837-FS3_L01.bam	SRR413903	@dbgap@:reads/SRP012000/SRS270643/SRX122230/SRR413903/SRR413903.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANFMG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANFMG_NormalVsPrimary.png	4			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANFMG_NormalVsPrimary.png	4			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANFMG_NormalVsPrimary.png	4			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C03	SRX176366		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-09A-03D GS01041-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46508-FS3_L01.bam	SRR531097	@dbgap@:reads/SRP012000/SRS301019/SRX176366/SRR531097/SRR531097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANFMG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANFMG_NormalVsPrimary.png	4			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANFMG_NormalVsPrimary.png	4			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANFMG_NormalVsPrimary.png	4			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANFMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANFMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-14A-01D	DNA	EFO	SRS301020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D03	SRX176365		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANFMG-14A-01D GS01041-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48440-FS3_L01.bam	SRR531104	@dbgap@:reads/SRP012000/SRS301020/SRX176365/SRR531104/SRR531104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGCM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGCM_NormalVsPrimary.png	4			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGCM_NormalVsPrimary.png	4			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGCM_NormalVsPrimary.png	4			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E03	SRX160104		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-03A-03D GS01041-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46505-FS3_L01.bam	SRR521903	@dbgap@:reads/SRP012000/SRS301021/SRX160104/SRR521903/SRR521903.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGCM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGCM_NormalVsPrimary.png	4			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGCM_NormalVsPrimary.png	4			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGCM_NormalVsPrimary.png	4			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGCM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGCM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F03	SRX160103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGCM-14A-02D GS01041-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46507-FS3_L01.bam	SRR521909	@dbgap@:reads/SRP012000/SRS301022/SRX160103/SRR521909/SRR521909.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGDN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsRecurrent.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsRecurrent.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsRecurrent.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-04A-02D	DNA	EFO	SRS270645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E03	SRX121044		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-04A-02D GS00747-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34884-FS3_L01.bam	SRR411117	@dbgap@:reads/SRP012000/SRS270645/SRX121044/SRR411117/SRR411117.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGDN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsPrimary.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsPrimary.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsPrimary.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-03D	DNA	EFO	SRS287476	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C03	SRX121043		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-09A-03D GS00747-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34886-FS3_L01.bam	SRR411125	@dbgap@:reads/SRP012000/SRS287476/SRX121043/SRR411125/SRR411125.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGDN_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsNormalFibroblast.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGDN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsPrimary.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGDN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsRecurrent.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsNormalFibroblast.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsPrimary.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsRecurrent.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsNormalFibroblast.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsPrimary.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsRecurrent.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-14A-02D	DNA	EFO	SRS270646	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D03	SRX121042		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-14A-02D GS00747-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34883-FS3_L01.bam	SRR411133	@dbgap@:reads/SRP012000/SRS270646/SRX121042/SRR411133/SRR411133.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGDN_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsNormalFibroblast.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsNormalFibroblast.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGDN_NormalVsNormalFibroblast.png	4			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGDN_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGDN_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-15A-01D	DNA	EFO	SRS489695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D03	SRX362942		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGDN-15A-01D GS01950-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60682-FS3_L03.bam	SRR1006915	@dbgap@:reads/SRP012000/SRS489695/SRX362942/SRR1006915/SRR1006915.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGJY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGJY_NormalVsPrimary.png	4			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGJY_NormalVsPrimary.png	4			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGJY_NormalVsPrimary.png	4			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B07	SRX362959		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-09A-03D GS01228-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60160-FS3_L01.bam	SRR1007026	@dbgap@:reads/SRP012000/SRS489712/SRX362959/SRR1007026/SRR1007026.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGJY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGJY_NormalVsPrimary.png	4			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGJY_NormalVsPrimary.png	4			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGJY_NormalVsPrimary.png	4			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGJY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGJY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C07	SRX362958		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGJY-14A-02D GS01228-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60161-FS3_L01.bam	SRR1007033	@dbgap@:reads/SRP012000/SRS489711/SRX362958/SRR1007033/SRR1007033.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGTF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGTF_NormalVsPrimary.png	4			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGTF_NormalVsPrimary.png	4			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGTF_NormalVsPrimary.png	4			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G11	SRX202417		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-09A-02D GS01087-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52326-FS3_L01.bam	SRR610617	@dbgap@:reads/SRP012000/SRS373867/SRX202417/SRR610617/SRR610617.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANGTF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGTF_NormalVsPrimary.png	4			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGTF_NormalVsPrimary.png	4			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANGTF_NormalVsPrimary.png	4			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANGTF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANGTF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G03	SRX202416		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANGTF-14A-01D GS01087-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52994-FS3_L01.bam	SRR610625	@dbgap@:reads/SRP012000/SRS160277/SRX202416/SRR610625/SRR610625.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANHYK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANHYK_NormalVsPrimary.png	4			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANHYK_NormalVsPrimary.png	4			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANHYK_NormalVsPrimary.png	4			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-03D	DNA	EFO	SRS301023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B04	SRX159231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-09A-03D GS01041-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46243-FS3_L01.bam	SRR520512	@dbgap@:reads/SRP012000/SRS301023/SRX159231/SRR520512/SRR520512.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANHYK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANHYK_NormalVsPrimary.png	4			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANHYK_NormalVsPrimary.png	4			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANHYK_NormalVsPrimary.png	4			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANHYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANHYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-02D	DNA	EFO	SRS301024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C04	SRX159230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANHYK-14A-02D GS01041-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46244-FS3_L01.bam	SRR520519	@dbgap@:reads/SRP012000/SRS301024/SRX159230/SRR520519/SRR520519.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANINI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANINI_NormalVsPrimary.png	4			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANINI_NormalVsPrimary.png	4			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANINI_NormalVsPrimary.png	4			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-09A-03D GS01041-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D04	SRX159552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-09A-03D GS01041-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L03.bam	SRR520889	@dbgap@:reads/SRP012000/SRS301025/SRX159552/SRR520889/SRR520889.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANINI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANINI_NormalVsPrimary.png	4			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANINI_NormalVsPrimary.png	4			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANINI_NormalVsPrimary.png	4			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANINI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANINI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANINI-14A-02D GS01041-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E04	SRX159551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANINI-14A-02D GS01041-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46267-FS3_L01.bam	SRR520896	@dbgap@:reads/SRP012000/SRS301026/SRX159551/SRR520896/SRR520896.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANJGR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANJGR_NormalVsPrimary.png	4			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANJGR_NormalVsPrimary.png	4			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANJGR_NormalVsPrimary.png	4			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F04	SRX159550		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-09A-03D GS01041-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L03.bam	SRR520874	@dbgap@:reads/SRP012000/SRS301027/SRX159550/SRR520874/SRR520874.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANJGR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANJGR_NormalVsPrimary.png	4			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANJGR_NormalVsPrimary.png	4			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANJGR_NormalVsPrimary.png	4			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANJGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANJGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G04	SRX159549		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANJGR-14A-02D GS01041-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44734-FS3_L01.bam	SRR520880	@dbgap@:reads/SRP012000/SRS301028/SRX159549/SRR520880/SRR520880.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANKFG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFG_NormalVsPrimary.png	4			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFG_NormalVsPrimary.png	4			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFG_NormalVsPrimary.png	4			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-03D	DNA	EFO	SRS301029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H04	SRX159229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-09A-03D GS01041-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44737-FS3_L01.bam	SRR520495	@dbgap@:reads/SRP012000/SRS301029/SRX159229/SRR520495/SRR520495.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANKFG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFG_NormalVsPrimary.png	4			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFG_NormalVsPrimary.png	4			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFG_NormalVsPrimary.png	4			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-02D	DNA	EFO	SRS301030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A05	SRX159228		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFG-14A-02D GS01041-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L01.bam	SRR520503	@dbgap@:reads/SRP012000/SRS301030/SRX159228/SRR520503/SRR520503.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANKFZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFZ_NormalVsPrimary.png	4			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFZ_NormalVsPrimary.png	4			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFZ_NormalVsPrimary.png	4			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D07	SRX362965		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-09A-02D GS01228-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59881-FS3_L01.bam	SRR1007069	@dbgap@:reads/SRP012000/SRS489718/SRX362965/SRR1007069/SRR1007069.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANKFZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFZ_NormalVsPrimary.png	4			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFZ_NormalVsPrimary.png	4			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKFZ_NormalVsPrimary.png	4			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKFZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKFZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E07	SRX362964		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKFZ-14A-02D GS01228-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59884-FS3_L01.bam	SRR1007076	@dbgap@:reads/SRP012000/SRS489717/SRX362964/SRR1007076/SRR1007076.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANKKE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKKE_NormalVsPrimary.png	4			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKKE_NormalVsPrimary.png	4			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKKE_NormalVsPrimary.png	4			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B05	SRX159560		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-09A-03D GS01041-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43627-FS3_L01.bam	SRR520949	@dbgap@:reads/SRP012000/SRS301031/SRX159560/SRR520949/SRR520949.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANKKE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKKE_NormalVsPrimary.png	4			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKKE_NormalVsPrimary.png	4			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKKE_NormalVsPrimary.png	4			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-02D	DNA	EFO	SRS301032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C05	SRX159559		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKKE-14A-02D GS01041-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48766-FS3_L03.bam	SRR520959	@dbgap@:reads/SRP012000/SRS301032/SRX159559/SRR520959/SRR520959.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANKNB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKNB_NormalVsPrimary.png	4			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKNB_NormalVsPrimary.png	4			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKNB_NormalVsPrimary.png	4			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F07	SRX362926		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-09A-02D GS01228-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L03.bam	SRR1006795	@dbgap@:reads/SRP012000/SRS489679/SRX362926/SRR1006795/SRR1006795.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANKNB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKNB_NormalVsPrimary.png	4			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKNB_NormalVsPrimary.png	4			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANKNB_NormalVsPrimary.png	4			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANKNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANKNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-14A-01D	DNA	EFO	SRS489678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G07	SRX362925		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANKNB-14A-01D GS01228-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59880-FS3_L01.bam	SRR1006802	@dbgap@:reads/SRP012000/SRS489678/SRX362925/SRR1006802/SRR1006802.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLIR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsRecurrent.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsRecurrent.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsRecurrent.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D01	SRX148729		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-04A-01D GS00998-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43054-FS3_L01.bam	SRR498796	@dbgap@:reads/SRP012000/SRS270648/SRX148729/SRR498796/SRR498796.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLIR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsPrimary.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsPrimary.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsPrimary.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02D	DNA	EFO	SRS287478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_C06	SRX148730		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-09A-02D GS00998-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L03.bam	SRR498789	@dbgap@:reads/SRP012000/SRS287478/SRX148730/SRR498789/SRR498789.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLIR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsPrimary.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLIR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsRecurrent.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsPrimary.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsRecurrent.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsPrimary.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIR_NormalVsRecurrent.png	4			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-14A-02D	DNA	EFO	SRS270649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00998-CLS_D06	SRX148728		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIR-14A-02D GS00998-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43055-FS3_L01.bam	SRR498803	@dbgap@:reads/SRP012000/SRS270649/SRX148728/SRR498803/SRR498803.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLIZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsRecurrent.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsRecurrent.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsRecurrent.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E12	SRX171010		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-04A-02D GS01044-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L01.bam	SRR527492	@dbgap@:reads/SRP012000/SRS270650/SRX171010/SRR527492/SRR527492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLIZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsPrimary.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsPrimary.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsPrimary.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-02D	DNA	EFO	SRS270651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H02	SRX171011		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-09A-02D GS01044-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49015-FS3_L01.bam	SRR527485	@dbgap@:reads/SRP012000/SRS270651/SRX171011/SRR527485/SRR527485.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLIZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsPrimary.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLIZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsRecurrent.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsPrimary.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsRecurrent.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsPrimary.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLIZ_NormalVsRecurrent.png	4			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLIZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLIZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-02D	DNA	EFO	SRS270652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A03	SRX171009		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLIZ-14A-02D GS01044-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49014-FS3_L01.bam	SRR527499	@dbgap@:reads/SRP012000/SRS270652/SRX171009/SRR527499/SRR527499.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLJN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLJN_NormalVsPrimary.png	4			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLJN_NormalVsPrimary.png	4			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLJN_NormalVsPrimary.png	4			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D05	SRX159554		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-09A-03D GS01041-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47229-FS3_L03.bam	SRR520904	@dbgap@:reads/SRP012000/SRS301033/SRX159554/SRR520904/SRR520904.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLJN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLJN_NormalVsPrimary.png	4			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLJN_NormalVsPrimary.png	4			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLJN_NormalVsPrimary.png	4			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E05	SRX159553		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLJN-14A-02D GS01041-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47634-FS3_L01.bam	SRR520911	@dbgap@:reads/SRP012000/SRS301034/SRX159553/SRR520911/SRR520911.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLKB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLKB_NormalVsPrimary.png	4			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLKB_NormalVsPrimary.png	4			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLKB_NormalVsPrimary.png	4			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F05	SRX159558		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-09A-03D GS01041-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47636-FS3_L01.bam	SRR520933	@dbgap@:reads/SRP012000/SRS301035/SRX159558/SRR520933/SRR520933.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLKB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLKB_NormalVsPrimary.png	4			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLKB_NormalVsPrimary.png	4			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLKB_NormalVsPrimary.png	4			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLKB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLKB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G05	SRX159557		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLKB-14A-02D GS01041-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44742-FS3_L01.bam	SRR520941	@dbgap@:reads/SRP012000/SRS301036/SRX159557/SRR520941/SRR520941.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLLX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C05	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00943-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLLX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-04A-01D	DNA	EFO	SRS270654	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H03	SRX150055		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-04A-01D GS00747-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42111-FS3_L01.bam	SRR501570	@dbgap@:reads/SRP012000/SRS270654/SRX150055/SRR501570/SRR501570.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLLX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F03	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00747-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLLX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01D	DNA	EFO	SRS287480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A05	SRX150056		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-09A-01D GS00943-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41575-FS3_L01.bam	SRR501562	@dbgap@:reads/SRP012000/SRS287480/SRX150056/SRR501562/SRR501562.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLLX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLLX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B05	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00943-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLLX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLLX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsPrimary.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLLX_NormalVsRecurrent.png	4			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLLX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLLX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-14A-01D	DNA	EFO	SRS270655	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G03	SRX150054		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLLX-14A-01D GS00747-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41576-FS3_L03.bam	SRR501577	@dbgap@:reads/SRP012000/SRS270655/SRX150054/SRR501577/SRR501577.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLXM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsRecurrent.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsRecurrent.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsRecurrent.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D04	SRX122693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-04A-01D GS00747-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34268-FS3_L01.bam	SRR415061	@dbgap@:reads/SRP012000/SRS270657/SRX122693/SRR415061/SRR415061.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLXM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsPrimary.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsPrimary.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsPrimary.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A04	SRX122694		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-09A-02D GS00747-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34269-FS3_L01.bam	SRR415053	@dbgap@:reads/SRP012000/SRS287482/SRX122694/SRR415053/SRR415053.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLXM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsPrimary.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANLXM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsRecurrent.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsPrimary.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsRecurrent.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsPrimary.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANLXM_NormalVsRecurrent.png	4			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANLXM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANLXM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B04	SRX122692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANLXM-14A-01D GS00747-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34613-FS3_L01.bam	SRR415069	@dbgap@:reads/SRP012000/SRS270658/SRX122692/SRR415069/SRR415069.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANMEM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANMEM_NormalVsPrimary.png	4			
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANMEM_NormalVsPrimary.png	4			
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANMEM_NormalVsPrimary.png	4			
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E06	SRX362972		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-03A-01D GS01241-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L01.bam	SRR1007118	@dbgap@:reads/SRP012000/SRS489725/SRX362972/SRR1007118/SRR1007118.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANMEM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANMEM_NormalVsPrimary.png	4			
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANMEM_NormalVsPrimary.png	4			
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANMEM_NormalVsPrimary.png	4			
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANMEM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANMEM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-14A-03D	DNA	EFO	SRS489724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F06	SRX362971		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANMEM-14A-03D GS01241-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60438-FS3_L01.bam	SRR1007125	@dbgap@:reads/SRP012000/SRS489724/SRX362971/SRR1007125/SRR1007125.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANNHB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsRecurrent.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsRecurrent.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsRecurrent.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B03	SRX122344		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-04A-02D GS00747-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34887-FS3_L01.bam	SRR414033	@dbgap@:reads/SRP012000/SRS270660/SRX122344/SRR414033/SRR414033.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANNHB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsPrimary.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsPrimary.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsPrimary.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03D	DNA	EFO	SRS287483	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H02	SRX122345		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-09A-03D GS00747-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34888-FS3_L01.bam	SRR414025	@dbgap@:reads/SRP012000/SRS287483/SRX122345/SRR414025/SRR414025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANNHB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsPrimary.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANNHB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsRecurrent.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsPrimary.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsRecurrent.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsPrimary.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNHB_NormalVsRecurrent.png	4			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A03	SRX122343		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNHB-14A-01D GS00747-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37965-FS3_L01.bam	SRR414041	@dbgap@:reads/SRP012000/SRS270661/SRX122343/SRR414041/SRR414041.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANNJI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNJI_NormalVsPrimary.png	4			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNJI_NormalVsPrimary.png	4			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNJI_NormalVsPrimary.png	4			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H05	SRX160840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-09A-04D GS01041-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47639-FS3_L01.bam	SRR524904	@dbgap@:reads/SRP012000/SRS301037/SRX160840/SRR524904/SRR524904.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANNJI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNJI_NormalVsPrimary.png	4			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNJI_NormalVsPrimary.png	4			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANNJI_NormalVsPrimary.png	4			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANNJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANNJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A06	SRX160839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANNJI-14A-02D GS01041-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48767-FS3_L01.bam	SRR524912	@dbgap@:reads/SRP012000/SRS301038/SRX160839/SRR524912/SRR524912.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANPKN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPKN_NormalVsPrimary.png	4			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPKN_NormalVsPrimary.png	4			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPKN_NormalVsPrimary.png	4			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03D	DNA	EFO	SRS301039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H06	SRX362988		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-09A-03D GS01241-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60534-FS3_L01.bam	SRR1007232	@dbgap@:reads/SRP012000/SRS301039/SRX362988/SRR1007232/SRR1007232.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANPKN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPKN_NormalVsPrimary.png	4			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPKN_NormalVsPrimary.png	4			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPKN_NormalVsPrimary.png	4			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-02D	DNA	EFO	SRS301040	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G06	SRX362987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPKN-14A-02D GS01241-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60533-FS3_L03.bam	SRR1007240	@dbgap@:reads/SRP012000/SRS301040/SRX362987/SRR1007240/SRR1007240.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANPLS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPLS_NormalVsPrimary.png	4			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPLS_NormalVsPrimary.png	4			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPLS_NormalVsPrimary.png	4			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B06	SRX160078		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-03A-05D GS01041-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47632-FS3_L01.bam	SRR521714	@dbgap@:reads/SRP012000/SRS301041/SRX160078/SRR521714/SRR521714.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANPLS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPLS_NormalVsPrimary.png	4			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPLS_NormalVsPrimary.png	4			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPLS_NormalVsPrimary.png	4			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C06	SRX160077		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPLS-14A-02D GS01041-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47637-FS3_L01.bam	SRR521722	@dbgap@:reads/SRP012000/SRS301042/SRX160077/SRR521722/SRR521722.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANPTM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPTM_NormalVsPrimary.png	4			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPTM_NormalVsPrimary.png	4			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPTM_NormalVsPrimary.png	4			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D06	SRX176563		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-09A-02D GS01041-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47631-FS3_L01.bam	SRR538933	@dbgap@:reads/SRP012000/SRS301043/SRX176563/SRR538933/SRR538933.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANPTM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPTM_NormalVsPrimary.png	4			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPTM_NormalVsPrimary.png	4			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANPTM_NormalVsPrimary.png	4			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E06	SRX176562		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANPTM-14A-02D GS01041-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48540-FS3_L01.bam	SRR538941	@dbgap@:reads/SRP012000/SRS301044/SRX176562/SRR538941/SRR538941.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANSBH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSBH_NormalVsPrimary.png	4			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSBH_NormalVsPrimary.png	4			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSBH_NormalVsPrimary.png	4			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-02D	DNA	EFO	SRS270662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G03	SRX120820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-09A-02D GS00792-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37162-FS3_L03.bam	SRR410224	@dbgap@:reads/SRP012000/SRS270662/SRX120820/SRR410224/SRR410224.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANSBH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSBH_NormalVsPrimary.png	4			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSBH_NormalVsPrimary.png	4			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSBH_NormalVsPrimary.png	4			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSBH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSBH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F08	SRX120819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSBH-14A-01D GS00790-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36777-FS3_L01.bam	SRR410231	@dbgap@:reads/SRP012000/SRS160286/SRX120819/SRR410231/SRR410231.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANSJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSJB_NormalVsPrimary.png	4			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSJB_NormalVsPrimary.png	4			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSJB_NormalVsPrimary.png	4			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H07	SRX362951		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-09A-01D GS01228-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59968-FS3_L03.bam	SRR1006972	@dbgap@:reads/SRP012000/SRS489704/SRX362951/SRR1006972/SRR1006972.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANSJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSJB_NormalVsPrimary.png	4			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSJB_NormalVsPrimary.png	4			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANSJB_NormalVsPrimary.png	4			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANSJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANSJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A08	SRX362950		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANSJB-14A-01D GS01228-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60285-FS3_L01.bam	SRR1006979	@dbgap@:reads/SRP012000/SRS489703/SRX362950/SRR1006979/SRR1006979.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANTNA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsRecurrent.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsRecurrent.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsRecurrent.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G04	SRX122697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-04A-01D GS00747-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34619-FS3_L01.bam	SRR415077	@dbgap@:reads/SRP012000/SRS270664/SRX122697/SRR415077/SRR415077.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANTNA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsPrimary.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsPrimary.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsPrimary.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02D	DNA	EFO	SRS287485	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E04	SRX122696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-09A-02D GS00747-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34615-FS3_L01.bam	SRR415085	@dbgap@:reads/SRP012000/SRS287485/SRX122696/SRR415085/SRR415085.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANTNA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsPrimary.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANTNA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsRecurrent.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsPrimary.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsRecurrent.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsPrimary.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTNA_NormalVsRecurrent.png	4			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTNA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTNA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-02D	DNA	EFO	SRS270665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F04	SRX122695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTNA-14A-02D GS00747-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33473-FS3_L01.bam	SRR415093	@dbgap@:reads/SRP012000/SRS270665/SRX122695/SRR415093/SRR415093.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANTPW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTPW_NormalVsPrimary.png	4			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTPW_NormalVsPrimary.png	4			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTPW_NormalVsPrimary.png	4			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F06	SRX176569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-09A-03D GS01041-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48539-FS3_L01.bam	SRR538978	@dbgap@:reads/SRP012000/SRS301045/SRX176569/SRR538978/SRR538978.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANTPW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTPW_NormalVsPrimary.png	4			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTPW_NormalVsPrimary.png	4			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANTPW_NormalVsPrimary.png	4			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANTPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANTPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-02D	DNA	EFO	SRS301046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G06	SRX176568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANTPW-14A-02D GS01041-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49080-FS3_L01.bam	SRR538985	@dbgap@:reads/SRP012000/SRS301046/SRX176568/SRR538985/SRR538985.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANUTB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUTB_NormalVsPrimary.png	4			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUTB_NormalVsPrimary.png	4			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUTB_NormalVsPrimary.png	4			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_B02	SRX129644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-09A-01D GS00661-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17794-FS3_L01.bam	SRR445143	@dbgap@:reads/SRP012000/SRS118045/SRX129644/SRR445143/SRR445143.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANUTB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUTB_NormalVsPrimary.png	4			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUTB_NormalVsPrimary.png	4			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUTB_NormalVsPrimary.png	4			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-01D	DNA	EFO	SRS118046	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_C04	SRX129643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUTB-14A-01D GS00661-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17722-FS3_L01.bam	SRR445151	@dbgap@:reads/SRP012000/SRS118046/SRX129643/SRR445151/SRR445151.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANUUA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUUA_NormalVsPrimary.png	4			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUUA_NormalVsPrimary.png	4			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUUA_NormalVsPrimary.png	4			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H06	SRX171696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-09A-03D GS01041-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48537-FS3_L03.bam	SRR529858	@dbgap@:reads/SRP012000/SRS301047/SRX171696/SRR529858/SRR529858.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANUUA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUUA_NormalVsPrimary.png	4			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUUA_NormalVsPrimary.png	4			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANUUA_NormalVsPrimary.png	4			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANUUA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANUUA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A07	SRX171695		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANUUA-14A-01D GS01041-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48768-FS3_L01.bam	SRR529864	@dbgap@:reads/SRP012000/SRS301048/SRX171695/SRR529864/SRR529864.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANVGE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGE_NormalVsPrimary.png	4			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGE_NormalVsPrimary.png	4			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGE_NormalVsPrimary.png	4			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B07	SRX170586		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-09A-02D GS01041-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48535-FS3_L01.bam	SRR525876	@dbgap@:reads/SRP012000/SRS301049/SRX170586/SRR525876/SRR525876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANVGE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGE_NormalVsPrimary.png	4			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGE_NormalVsPrimary.png	4			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGE_NormalVsPrimary.png	4			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C07	SRX170585		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGE-14A-01D GS01041-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48536-FS3_L01.bam	SRR525883	@dbgap@:reads/SRP012000/SRS301050/SRX170585/SRR525883/SRR525883.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANVGP_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsRecurrent.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsRecurrent.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsRecurrent.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-03D	DNA	EFO	SRS270667	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B05	SRX148446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-04A-03D GS00747-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34511-FS3_L01.bam	SRR497776	@dbgap@:reads/SRP012000/SRS270667/SRX148446/SRR497776/SRR497776.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANVGP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsPrimary.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsPrimary.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsPrimary.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-03D	DNA	EFO	SRS287488	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H04	SRX148447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-09A-03D GS00747-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34620-FS3_L01.bam	SRR497768	@dbgap@:reads/SRP012000/SRS287488/SRX148447/SRR497768/SRR497768.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANVGP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsPrimary.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANVGP_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsRecurrent.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsPrimary.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsRecurrent.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsPrimary.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsRecurrent.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00943-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANVGP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsPrimary.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANVGP_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsRecurrent.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsPrimary.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsRecurrent.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsPrimary.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVGP_NormalVsRecurrent.png	4			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVGP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVGP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-02D	DNA	EFO	SRS270668	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A05	SRX148445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVGP-14A-02D GS00747-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41443-FS3_L01.bam	SRR497784	@dbgap@:reads/SRP012000/SRS270668/SRX148445/SRR497784/SRR497784.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANVUF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVUF_NormalVsPrimary.png	4			
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVUF_NormalVsPrimary.png	4			
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVUF_NormalVsPrimary.png	4			
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-03D	DNA	EFO	SRS301051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E07	SRX176565		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-09A-03D GS01041-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L03.bam	SRR538948	@dbgap@:reads/SRP012000/SRS301051/SRX176565/SRR538948/SRR538948.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANVUF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVUF_NormalVsPrimary.png	4			
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVUF_NormalVsPrimary.png	4			
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANVUF_NormalVsPrimary.png	4			
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANVUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANVUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-14A-01D	DNA	EFO	SRS301052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F07	SRX176564		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANVUF-14A-01D GS01041-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48534-FS3_L01.bam	SRR538955	@dbgap@:reads/SRP012000/SRS301052/SRX176564/SRR538955/SRR538955.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANWHP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANWHP_NormalVsPrimary.png	4			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANWHP_NormalVsPrimary.png	4			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANWHP_NormalVsPrimary.png	4			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G07	SRX170605		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-09A-02D GS01041-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48532-FS3_L01.bam	SRR526724	@dbgap@:reads/SRP012000/SRS301053/SRX170605/SRR526724/SRR526724.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANWHP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANWHP_NormalVsPrimary.png	4			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANWHP_NormalVsPrimary.png	4			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANWHP_NormalVsPrimary.png	4			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANWHP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANWHP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H07	SRX170604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANWHP-14A-01D GS01041-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48336-FS3_L01.bam	SRR526732	@dbgap@:reads/SRP012000/SRS301054/SRX170604/SRR526732/SRR526732.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANYCG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsRecurrent.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsRecurrent.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsRecurrent.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E05	SRX121046		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-04A-01D GS00747-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34507-FS3_L01.bam	SRR411149	@dbgap@:reads/SRP012000/SRS270670/SRX121046/SRR411149/SRR411149.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANYCG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsPrimary.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsPrimary.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsPrimary.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-09A-01D	DNA	EFO	SRS287489	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C05	SRX121047		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-09A-01D GS00747-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34509-FS3_L01.bam	SRR411141	@dbgap@:reads/SRP012000/SRS287489/SRX121047/SRR411141/SRR411141.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANYCG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsPrimary.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANYCG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsRecurrent.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsPrimary.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsRecurrent.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsPrimary.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYCG_NormalVsRecurrent.png	4			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYCG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYCG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-14A-01D	DNA	EFO	SRS270671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D05	SRX121045		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYCG-14A-01D GS00747-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34510-FS3_L01.bam	SRR411157	@dbgap@:reads/SRP012000/SRS270671/SRX121045/SRR411157/SRR411157.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANYGP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYGP_NormalVsPrimary.png	4			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYGP_NormalVsPrimary.png	4			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYGP_NormalVsPrimary.png	4			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A08	SRX171548		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-09A-02D GS01041-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48769-FS3_L01.bam	SRR528967	@dbgap@:reads/SRP012000/SRS301055/SRX171548/SRR528967/SRR528967.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANYGP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYGP_NormalVsPrimary.png	4			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYGP_NormalVsPrimary.png	4			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYGP_NormalVsPrimary.png	4			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-14A-01D	DNA	EFO	SRS301056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B08	SRX171547		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYGP-14A-01D GS01041-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48531-FS3_L01.bam	SRR528974	@dbgap@:reads/SRP012000/SRS301056/SRX171547/SRR528974/SRR528974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANYNR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYNR_NormalVsPrimary.png	4			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYNR_NormalVsPrimary.png	4			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYNR_NormalVsPrimary.png	4			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C08	SRX176372		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-09A-01D GS01041-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48508-FS3_L01.bam	SRR538458	@dbgap@:reads/SRP012000/SRS301057/SRX176372/SRR538458/SRR538458.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANYNR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYNR_NormalVsPrimary.png	4			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYNR_NormalVsPrimary.png	4			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYNR_NormalVsPrimary.png	4			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D08	SRX176371		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYNR-14A-01D GS01041-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48509-FS3_L01.bam	SRR538464	@dbgap@:reads/SRP012000/SRS301058/SRX176371/SRR538464/SRR538464.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANYSN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYSN_NormalVsPrimary.png	4			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYSN_NormalVsPrimary.png	4			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYSN_NormalVsPrimary.png	4			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-02D	DNA	EFO	SRS301059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E08	SRX159801		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-03A-02D GS01041-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48506-FS3_L01.bam	SRR521333	@dbgap@:reads/SRP012000/SRS301059/SRX159801/SRR521333/SRR521333.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANYSN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYSN_NormalVsPrimary.png	4			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYSN_NormalVsPrimary.png	4			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANYSN_NormalVsPrimary.png	4			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANYSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANYSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F08	SRX159800		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANYSN-14A-01D GS01041-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48507-FS3_L01.bam	SRR521341	@dbgap@:reads/SRP012000/SRS301060/SRX159800/SRR521341/SRR521341.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANZKA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZKA_NormalVsPrimary.png	4			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZKA_NormalVsPrimary.png	4			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZKA_NormalVsPrimary.png	4			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A02	SRX368259		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-09A-02D GS02040-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69044-FS3_L01.bam	SRR1017493	@dbgap@:reads/SRP012000/SRS494300/SRX368259/SRR1017493/SRR1017493.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANZKA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZKA_NormalVsPrimary.png	4			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZKA_NormalVsPrimary.png	4			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZKA_NormalVsPrimary.png	4			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZKA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZKA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-14A-02D	DNA	EFO	SRS494299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C04	SRX368258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZKA-14A-02D GS02040-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69184-FS3_L03.bam	SRR1017500	@dbgap@:reads/SRP012000/SRS494299/SRX368258/SRR1017500/SRR1017500.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANZWB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZWB_NormalVsPrimary.png	4			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZWB_NormalVsPrimary.png	4			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZWB_NormalVsPrimary.png	4			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G08	SRX159233		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-09A-03D GS01041-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48504-FS3_L01.bam	SRR520526	@dbgap@:reads/SRP012000/SRS301061/SRX159233/SRR520526/SRR520526.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PANZWB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZWB_NormalVsPrimary.png	4			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZWB_NormalVsPrimary.png	4			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PANZWB_NormalVsPrimary.png	4			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PANZWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PANZWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H08	SRX159232		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PANZWB-14A-02D GS01041-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48505-FS3_L01.bam	SRR520533	@dbgap@:reads/SRP012000/SRS301062/SRX159232/SRR520533/SRR520533.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPAWN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPAWN_NormalVsPrimary.png	4			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPAWN_NormalVsPrimary.png	4			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPAWN_NormalVsPrimary.png	4			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A09	SRX176159		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-09A-02D GS01041-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L01.bam	SRR537214	@dbgap@:reads/SRP012000/SRS301063/SRX176159/SRR537214/SRR537214.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPAWN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPAWN_NormalVsPrimary.png	4			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPAWN_NormalVsPrimary.png	4			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPAWN_NormalVsPrimary.png	4			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPAWN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPAWN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B09	SRX176158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPAWN-14A-01D GS01041-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48503-FS3_L01.bam	SRR537222	@dbgap@:reads/SRP012000/SRS301064/SRX176158/SRR537222/SRR537222.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPBEJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsRecurrent.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsRecurrent.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsRecurrent.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00943-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPBEJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsRecurrent.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsRecurrent.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsRecurrent.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H05	SRX148766		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-04A-01D GS00747-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41441-FS3_L01.bam	SRR499635	@dbgap@:reads/SRP012000/SRS270673/SRX148766/SRR499635/SRR499635.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPBEJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsPrimary.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsPrimary.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsPrimary.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00747-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPBEJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsPrimary.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsPrimary.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsPrimary.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-02D	DNA	EFO	SRS287490	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E05	SRX148765		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-09A-02D GS00943-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41442-FS3_L01.bam	SRR499642	@dbgap@:reads/SRP012000/SRS287490/SRX148765/SRR499642/SRR499642.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPBEJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsPrimary.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPBEJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsRecurrent.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsPrimary.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsRecurrent.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsPrimary.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPBEJ_NormalVsRecurrent.png	4			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPBEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPBEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G05	SRX148764		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPBEJ-14A-01D GS00747-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34506-FS3_L01.bam	SRR499650	@dbgap@:reads/SRP012000/SRS270674/SRX148764/SRR499650/SRR499650.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPVCN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVCN_NormalVsPrimary.png	4			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVCN_NormalVsPrimary.png	4			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVCN_NormalVsPrimary.png	4			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03D	DNA	EFO	SRS270675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B06	SRX120822		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-09A-03D GS00792-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34596-FS3_L01.bam	SRR410238	@dbgap@:reads/SRP012000/SRS270675/SRX120822/SRR410238/SRR410238.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPVCN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVCN_NormalVsPrimary.png	4			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVCN_NormalVsPrimary.png	4			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVCN_NormalVsPrimary.png	4			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVCN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVCN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C09	SRX120821		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVCN-14A-02D GS00790-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34597-FS3_L01.bam	SRR410246	@dbgap@:reads/SRP012000/SRS270676/SRX120821/SRR410246/SRR410246.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPVDV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVDV_NormalVsPrimary.png	4			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVDV_NormalVsPrimary.png	4			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVDV_NormalVsPrimary.png	4			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-03D	DNA	EFO	SRS301065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C09	SRX160713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-09A-03D GS01041-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48770-FS3_L03.bam	SRR524621	@dbgap@:reads/SRP012000/SRS301065/SRX160713/SRR524621/SRR524621.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPVDV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVDV_NormalVsPrimary.png	4			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVDV_NormalVsPrimary.png	4			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVDV_NormalVsPrimary.png	4			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVDV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVDV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D09	SRX160712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVDV-14A-01D GS01041-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48528-FS3_L01.bam	SRR524627	@dbgap@:reads/SRP012000/SRS301066/SRX160712/SRR524627/SRR524627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPVZK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsRecurrent.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsRecurrent.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsRecurrent.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-04A-01D	DNA	EFO	SRS489698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_A02	SRX362945		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-04A-01D GS01950-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61003-FS3_L01.bam	SRR1006936	@dbgap@:reads/SRP012000/SRS489698/SRX362945/SRR1006936/SRR1006936.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPVZK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsPrimary.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsPrimary.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsPrimary.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03D	DNA	EFO	SRS287491	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A12	SRX131659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-09A-03D GS00747-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36156-FS3_L01.bam	SRR448882	@dbgap@:reads/SRP012000/SRS287491/SRX131659/SRR448882/SRR448882.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPVZK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsPrimary.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPVZK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsRecurrent.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsPrimary.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsRecurrent.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsPrimary.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPVZK_NormalVsRecurrent.png	4			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPVZK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPVZK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-14A-01D	DNA	EFO	SRS270678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B12	SRX131658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPVZK-14A-01D GS00747-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36670-FS3_L01.bam	SRR448890	@dbgap@:reads/SRP012000/SRS270678/SRX131658/SRR448890/SRR448890.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPWHS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWHS_NormalVsPrimary.png	4			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWHS_NormalVsPrimary.png	4			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWHS_NormalVsPrimary.png	4			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03D	DNA	EFO	SRS301067	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E09	SRX176567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-09A-03D GS01041-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48526-FS3_L01.bam	SRR538962	@dbgap@:reads/SRP012000/SRS301067/SRX176567/SRR538962/SRR538962.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPWHS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWHS_NormalVsPrimary.png	4			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWHS_NormalVsPrimary.png	4			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWHS_NormalVsPrimary.png	4			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWHS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWHS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F09	SRX176566		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWHS-14A-02D GS01041-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48527-FS3_L01.bam	SRR538970	@dbgap@:reads/SRP012000/SRS301068/SRX176566/SRR538970/SRR538970.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPWIU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWIU_NormalVsPrimary.png	4			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWIU_NormalVsPrimary.png	4			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWIU_NormalVsPrimary.png	4			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03D	DNA	EFO	SRS301069	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_F03	SRX395466	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for genomes. This could suggest a reduction in the quality of CNV calls, although other CNV metrics appear normal. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-09A-03D GS01950-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60935-FS3-L01.bam	SRR1054181	@dbgap@:reads/SRP012000/SRS301069/SRX395466/SRR1054181/SRR1054181.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPWIU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWIU_NormalVsPrimary.png	4			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWIU_NormalVsPrimary.png	4			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWIU_NormalVsPrimary.png	4			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H09	SRX395467		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWIU-14A-01D GS01041-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48525-FS3-L01.bam	SRR1054174	@dbgap@:reads/SRP012000/SRS301070/SRX395467/SRR1054174/SRR1054174.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPWYK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWYK_NormalVsPrimary.png	4			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWYK_NormalVsPrimary.png	4			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWYK_NormalVsPrimary.png	4			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-02D	DNA	EFO	SRS301071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A10	SRX160835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-09A-02D GS01041-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48771-FS3_L01.bam	SRR524868	@dbgap@:reads/SRP012000/SRS301071/SRX160835/SRR524868/SRR524868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPWYK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWYK_NormalVsPrimary.png	4			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWYK_NormalVsPrimary.png	4			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPWYK_NormalVsPrimary.png	4			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_B10	SRX160834		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPWYK-14A-01D GS01041-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48523-FS3_L01.bam	SRR524876	@dbgap@:reads/SRP012000/SRS301072/SRX160834/SRR524876/SRR524876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPXRJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsRecurrent.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsRecurrent.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsRecurrent.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02D	DNA	EFO	SRS270679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_E05	SRX213231		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-04A-02D GS01097-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56008-FS3_L01.bam	SRR641492	@dbgap@:reads/SRP012000/SRS270679/SRX213231/SRR641492/SRR641492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPXRJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsPrimary.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsPrimary.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsPrimary.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-02D	DNA	EFO	SRS382169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B12	SRX213230		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-09A-02D GS01114-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56071-FS3_L01.bam	SRR641499	@dbgap@:reads/SRP012000/SRS382169/SRX213230/SRR641499/SRR641499.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPXRJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsPrimary.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPXRJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsRecurrent.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsPrimary.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsRecurrent.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsPrimary.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXRJ_NormalVsRecurrent.png	4			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXRJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXRJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-01D	DNA	EFO	SRS270681	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01097-CLS_A02	SRX213229		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXRJ-14A-01D GS01097-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56009-FS3_L01.bam	SRR641506	@dbgap@:reads/SRP012000/SRS270681/SRX213229/SRR641506/SRR641506.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPXWI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXWI_NormalVsPrimary.png	4			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXWI_NormalVsPrimary.png	4			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXWI_NormalVsPrimary.png	4			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03D	DNA	EFO	SRS270682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G02	SRX122342		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-09A-03D GS00790-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33836-FS3_L01.bam	SRR414009	@dbgap@:reads/SRP012000/SRS270682/SRX122342/SRR414009/SRR414009.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PAPXWI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXWI_NormalVsPrimary.png	4			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXWI_NormalVsPrimary.png	4			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PAPXWI_NormalVsPrimary.png	4			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PAPXWI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PAPXWI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F09	SRX122341		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PAPXWI-14A-02D GS00792-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36040-FS3_L01.bam	SRR414017	@dbgap@:reads/SRP012000/SRS270683/SRX122341/SRR414017/SRR414017.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARAHF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAHF_NormalVsPrimary.png	4			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAHF_NormalVsPrimary.png	4			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAHF_NormalVsPrimary.png	4			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-02D	DNA	EFO	SRS516770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_D04	SRX395820		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-09A-02D GS01969-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62280-FS3-L01.bam	SRR1054611	@dbgap@:reads/SRP012000/SRS516770/SRX395820/SRR1054611/SRR1054611.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARAHF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAHF_NormalVsPrimary.png	4			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAHF_NormalVsPrimary.png	4			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAHF_NormalVsPrimary.png	4			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A03	SRX395819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAHF-14A-03D GS01046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47506-FS3-L01.bam	SRR1054618	@dbgap@:reads/SRP012000/SRS301074/SRX395819/SRR1054618/SRR1054618.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARAJX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAJX_NormalVsPrimary.png	4			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAJX_NormalVsPrimary.png	4			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAJX_NormalVsPrimary.png	4			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02D	DNA	EFO	SRS301075	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C10	SRX176374		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-09A-02D GS01041-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48521-FS3_L01.bam	SRR538472	@dbgap@:reads/SRP012000/SRS301075/SRX176374/SRR538472/SRR538472.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARAJX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAJX_NormalVsPrimary.png	4			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAJX_NormalVsPrimary.png	4			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARAJX_NormalVsPrimary.png	4			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARAJX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARAJX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-14A-01D	DNA	EFO	SRS301076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D10	SRX176373		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARAJX-14A-01D GS01041-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48522-FS3_L01.bam	SRR538479	@dbgap@:reads/SRP012000/SRS301076/SRX176373/SRR538479/SRR538479.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARANT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARANT_NormalVsPrimary.png	4			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARANT_NormalVsPrimary.png	4			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARANT_NormalVsPrimary.png	4			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02D	DNA	EFO	SRS301077	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-09A-02D GS01041-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E10	SRX176370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-09A-02D GS01041-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49059-FS3_L01.bam	SRR538444	@dbgap@:reads/SRP012000/SRS301077/SRX176370/SRR538444/SRR538444.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARANT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARANT_NormalVsPrimary.png	4			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARANT_NormalVsPrimary.png	4			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARANT_NormalVsPrimary.png	4			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARANT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARANT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARANT-14A-01D GS01041-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F10	SRX176369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARANT-14A-01D GS01041-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L03.bam	SRR538451	@dbgap@:reads/SRP012000/SRS301078/SRX176369/SRR538451/SRR538451.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARASV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsPrimary.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsPrimary.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsPrimary.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03D	DNA	EFO	SRS270684	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-03A-03D GS00747-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A06	SRX121052		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-03A-03D GS00747-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34804-FS3_L01.bam	SRR411197	@dbgap@:reads/SRP012000/SRS270684/SRX121052/SRR411197/SRR411197.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARASV_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsRecurrent.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsRecurrent.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsRecurrent.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-04A-02D GS00747-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C06	SRX121053		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-04A-02D GS00747-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34504-FS3_L01.bam	SRR411189	@dbgap@:reads/SRP012000/SRS270685/SRX121053/SRR411189/SRR411189.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARASV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsPrimary.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARASV_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsRecurrent.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsPrimary.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsRecurrent.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsPrimary.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARASV_NormalVsRecurrent.png	4			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARASV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARASV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARASV-14A-01D GS00747-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B06	SRX121051		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARASV-14A-01D GS00747-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34505-FS3_L01.bam	SRR411205	@dbgap@:reads/SRP012000/SRS270686/SRX121051/SRR411205/SRR411205.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBFJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBFJ_NormalVsPrimary.png	4			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBFJ_NormalVsPrimary.png	4			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBFJ_NormalVsPrimary.png	4			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02D	DNA	EFO	SRS489745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B08	SRX362994		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-09A-02D GS01228-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60287-FS3_L01.bam	SRR1007275	@dbgap@:reads/SRP012000/SRS489745/SRX362994/SRR1007275/SRR1007275.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBFJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBFJ_NormalVsPrimary.png	4			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBFJ_NormalVsPrimary.png	4			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBFJ_NormalVsPrimary.png	4			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBFJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBFJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-14A-01D	DNA	EFO	SRS489744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C08	SRX362993		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBFJ-14A-01D GS01228-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60286-FS3_L01.bam	SRR1007282	@dbgap@:reads/SRP012000/SRS489744/SRX362993/SRR1007282/SRR1007282.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBIU_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsRecurrent.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsRecurrent.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsRecurrent.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B07	SRX148713		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-04A-01D GS00747-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33472-FS3_L01.bam	SRR498671	@dbgap@:reads/SRP012000/SRS270688/SRX148713/SRR498671/SRR498671.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBIU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H05	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00943-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBIU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H06	SRX148714		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-09A-02D GS00747-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L01.bam	SRR498663	@dbgap@:reads/SRP012000/SRS287493/SRX148714/SRR498663/SRR498663.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBIU_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsNormalFibroblast.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBIU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBIU_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsRecurrent.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsNormalFibroblast.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsRecurrent.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsNormalFibroblast.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsRecurrent.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A07	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00747-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBIU_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsNormalFibroblast.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBIU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBIU_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsRecurrent.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsNormalFibroblast.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsRecurrent.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsNormalFibroblast.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsPrimary.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsRecurrent.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A06	SRX148712		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-14A-01D GS00943-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41439-FS3_L01.bam	SRR498679	@dbgap@:reads/SRP012000/SRS270689/SRX148712/SRR498679/SRR498679.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBIU_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsNormalFibroblast.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsNormalFibroblast.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBIU_NormalVsNormalFibroblast.png	4			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBIU_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBIU_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-15A-01D	DNA	EFO	SRS489699	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_H02	SRX362946		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBIU-15A-01D GS01950-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60684-FS3_L01.bam	SRR1006943	@dbgap@:reads/SRP012000/SRS489699/SRX362946/SRR1006943/SRR1006943.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBRA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsRecurrent.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsRecurrent.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsRecurrent.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E07	SRX121873		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-04A-02D GS00747-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33467-FS3_L01.bam	SRR413444	@dbgap@:reads/SRP012000/SRS270691/SRX121873/SRR413444/SRR413444.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBRA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsPrimary.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsPrimary.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsPrimary.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-02D	DNA	EFO	SRS287494	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_H08	SRX121872		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-09A-02D GS00744-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34422-FS3_L01.bam	SRR413452	@dbgap@:reads/SRP012000/SRS287494/SRX121872/SRR413452/SRR413452.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBRA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsPrimary.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBRA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsRecurrent.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsPrimary.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsRecurrent.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsPrimary.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBRA_NormalVsRecurrent.png	4			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBRA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBRA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D07	SRX121871		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBRA-14A-01D GS00747-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37620-FS3_L01.bam	SRR413460	@dbgap@:reads/SRP012000/SRS270692/SRX121871/SRR413460/SRR413460.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBTC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBTC_NormalVsPrimary.png	4			
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBTC_NormalVsPrimary.png	4			
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBTC_NormalVsPrimary.png	4			
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-03A-01D	DNA	EFO	SRS301079	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D02	SRX172491		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-03A-01D GS01046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L01.bam	SRR530684	@dbgap@:reads/SRP012000/SRS301079/SRX172491/SRR530684/SRR530684.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBTC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBTC_NormalVsPrimary.png	4			
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBTC_NormalVsPrimary.png	4			
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBTC_NormalVsPrimary.png	4			
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBTC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBTC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTC-10A-01D	DNA	EFO	SRS301080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_E02	SRX172490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBTC-10A-01D GS01046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49259-FS3_L01.bam	SRR530692	@dbgap@:reads/SRP012000/SRS301080/SRX172490/SRR530692/SRR530692.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBXE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsRecurrent.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsRecurrent.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsRecurrent.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-04A-02D	DNA	EFO	SRS270693	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B07	SRX148724		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-04A-02D GS00790-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37363-FS3_L01.bam	SRR498741	@dbgap@:reads/SRP012000/SRS270693/SRX148724/SRR498741/SRR498741.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBXE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsPrimary.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsPrimary.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsPrimary.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E04	SRX148723		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-09A-01D GS00790-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37366-FS3_L01.bam	SRR498749	@dbgap@:reads/SRP012000/SRS270694/SRX148723/SRR498749/SRR498749.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBXE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsPrimary.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARBXE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsRecurrent.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsPrimary.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsRecurrent.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsPrimary.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARBXE_NormalVsRecurrent.png	4			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARBXE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARBXE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H07	SRX148722		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARBXE-14A-01D GS01004-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44419-FS3_L01.bam	SRR498757	@dbgap@:reads/SRP012000/SRS270695/SRX148722/SRR498757/SRR498757.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCCH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsPrimary.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsPrimary.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsPrimary.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D07	SRX156381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-03A-02D GS00790-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47066-FS3_L01.bam	SRR516484	@dbgap@:reads/SRP012000/SRS270696/SRX156381/SRR516484/SRR516484.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCCH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsRecurrent.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsRecurrent.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsRecurrent.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-04A-02D	DNA	EFO	SRS270697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_H06	SRX156382		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-04A-02D GS01004-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44415-FS3_L01.bam	SRR516477	@dbgap@:reads/SRP012000/SRS270697/SRX156382/SRR516477/SRR516477.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCCH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsPrimary.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCCH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsRecurrent.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsPrimary.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsRecurrent.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsPrimary.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCCH_NormalVsRecurrent.png	4			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCCH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCCH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-02D	DNA	EFO	SRS270698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E10	SRX156380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCCH-14A-02D GS00792-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37680-FS3_L01.bam	SRR516492	@dbgap@:reads/SRP012000/SRS270698/SRX156380/SRR516492/SRR516492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCEC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsPrimary.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsPrimary.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsPrimary.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-03A-02D	DNA	EFO	SRS301081	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_D08	SRX206478		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-03A-02D GS01115-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55872-FS3_L01.bam	SRR620283	@dbgap@:reads/SRP012000/SRS301081/SRX206478/SRR620283/SRR620283.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCEC_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsRecurrent.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsRecurrent.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsRecurrent.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-04A-02D	DNA	EFO	SRS270700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_C02	SRX206477		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-04A-02D GS01115-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55959-FS3_L03.bam	SRR620290	@dbgap@:reads/SRP012000/SRS270700/SRX206477/SRR620290/SRR620290.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCEC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsPrimary.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCEC_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsRecurrent.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsPrimary.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsRecurrent.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsPrimary.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCEC_NormalVsRecurrent.png	4			
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCEC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCEC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARCEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEC-10A-01D	DNA	EFO	SRS270701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01115-CLS_B02	SRX206476		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCEC-10A-01D GS01115-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55873-FS3_L01.bam	SRR620297	@dbgap@:reads/SRP012000/SRS270701/SRX206476/SRR620297/SRR620297.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCUK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsRecurrent.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsRecurrent.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsRecurrent.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H12	SRX170589		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-04A-02D GS01044-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49161-FS3_L01.bam	SRR526299	@dbgap@:reads/SRP012000/SRS270703/SRX170589/SRR526299/SRR526299.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCUK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsPrimary.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsPrimary.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsPrimary.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03D	DNA	EFO	SRS287495	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F12	SRX170588		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-09A-03D GS01044-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L01.bam	SRR526307	@dbgap@:reads/SRP012000/SRS287495/SRX170588/SRR526307/SRR526307.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCUK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsPrimary.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCUK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsRecurrent.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsPrimary.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsRecurrent.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsPrimary.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCUK_NormalVsRecurrent.png	4			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCUK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCUK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-02D	DNA	EFO	SRS270704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G12	SRX170587		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCUK-14A-02D GS01044-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49162-FS3_L03.bam	SRR526314	@dbgap@:reads/SRP012000/SRS270704/SRX170587/SRR526314/SRR526314.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCVS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsPrimary.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsPrimary.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsPrimary.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-01D	DNA	EFO	SRS270705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C10	SRX148763		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-03A-01D GS00792-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37362-FS3_L01.bam	SRR499612	@dbgap@:reads/SRP012000/SRS270705/SRX148763/SRR499612/SRR499612.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCVS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsRecurrent.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsRecurrent.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsRecurrent.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F05	SRX148762		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-04A-01D GS00790-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39636-FS3_L01.bam	SRR499620	@dbgap@:reads/SRP012000/SRS270706/SRX148762/SRR499620/SRR499620.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCVS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsPrimary.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCVS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsRecurrent.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsPrimary.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsRecurrent.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsPrimary.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCVS_NormalVsRecurrent.png	4			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B08	SRX148761		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCVS-14A-01D GS00943-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L03.bam	SRR499628	@dbgap@:reads/SRP012000/SRS270707/SRX148761/SRR499628/SRR499628.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCZL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsRecurrent.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsRecurrent.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsRecurrent.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02D	DNA	EFO	SRS301082	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E08	SRX170595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-04A-02D GS01044-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46992-FS3_L01.bam	SRR525485	@dbgap@:reads/SRP012000/SRS301082/SRX170595/SRR525485/SRR525485.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCZL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsPrimary.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsPrimary.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsPrimary.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02D	DNA	EFO	SRS270709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F02	SRX170596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-09A-02D GS01044-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48816-FS3_L01.bam	SRR525478	@dbgap@:reads/SRP012000/SRS270709/SRX170596/SRR525478/SRR525478.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCZL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsPrimary.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARCZL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsRecurrent.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsPrimary.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsRecurrent.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsPrimary.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARCZL_NormalVsRecurrent.png	4			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARCZL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARCZL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-02D	DNA	EFO	SRS270710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G02	SRX170594		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARCZL-14A-02D GS01044-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48796-FS3_L01.bam	SRR525492	@dbgap@:reads/SRP012000/SRS270710/SRX170594/SRR525492/SRR525492.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARDDY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsRecurrent.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsRecurrent.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsRecurrent.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-03D	DNA	EFO	SRS301083	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C08	SRX171648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-04A-03D GS01044-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48870-FS3_L01.bam	SRR529527	@dbgap@:reads/SRP012000/SRS301083/SRX171648/SRR529527/SRR529527.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARDDY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsPrimary.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsPrimary.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsPrimary.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A02	SRX171647		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-09A-03D GS01044-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L01.bam	SRR529534	@dbgap@:reads/SRP012000/SRS270712/SRX171647/SRR529534/SRR529534.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARDDY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsPrimary.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARDDY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsRecurrent.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsPrimary.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsRecurrent.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsPrimary.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDDY_NormalVsRecurrent.png	4			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B02	SRX171646		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDDY-14A-01D GS01044-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48869-FS3_L01.bam	SRR529541	@dbgap@:reads/SRP012000/SRS270713/SRX171646/SRR529541/SRR529541.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARDEV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDEV_NormalVsPrimary.png	4			
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDEV_NormalVsPrimary.png	4			
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDEV_NormalVsPrimary.png	4			
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A06	SRX362899		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-03A-01D GS01241-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60540-FS3_L01.bam	SRR1006602	@dbgap@:reads/SRP012000/SRS489652/SRX362899/SRR1006602/SRR1006602.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARDEV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDEV_NormalVsPrimary.png	4			
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDEV_NormalVsPrimary.png	4			
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDEV_NormalVsPrimary.png	4			
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDEV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDEV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-10A-01D	DNA	EFO	SRS489651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B06	SRX362898		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDEV-10A-01D GS01241-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60440-FS3_L01.bam	SRR1006609	@dbgap@:reads/SRP012000/SRS489651/SRX362898/SRR1006609/SRR1006609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARDMG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsRecurrent.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsRecurrent.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsRecurrent.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-04A-01D	DNA	EFO	SRS489719	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_B02	SRX362966		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-04A-01D GS01950-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60933-FS3_L01.bam	SRR1007083	@dbgap@:reads/SRP012000/SRS489719/SRX362966/SRR1007083/SRR1007083.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARDMG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsPrimary.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsPrimary.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsPrimary.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C02	SRX171543		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-09A-01D GS01044-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48868-FS3_L03.bam	SRR528932	@dbgap@:reads/SRP012000/SRS270714/SRX171543/SRR528932/SRR528932.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARDMG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsPrimary.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARDMG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsRecurrent.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsPrimary.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsRecurrent.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsPrimary.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARDMG_NormalVsRecurrent.png	4			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARDMG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARDMG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14B-01D	DNA	EFO	SRS301084	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D08	SRX171542		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARDMG-14B-01D GS01044-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48867-FS3_L01.bam	SRR528939	@dbgap@:reads/SRP012000/SRS301084/SRX171542/SRR528939/SRR528939.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARENB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARENB_NormalVsPrimary.png	4			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARENB_NormalVsPrimary.png	4			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARENB_NormalVsPrimary.png	4			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-02D	DNA	EFO	SRS489722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-09A-02D GS01228-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D08	SRX362970		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-09A-02D GS01228-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60289-FS3_L01.bam	SRR1007104	@dbgap@:reads/SRP012000/SRS489722/SRX362970/SRR1007104/SRR1007104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARENB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARENB_NormalVsPrimary.png	4			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARENB_NormalVsPrimary.png	4			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARENB_NormalVsPrimary.png	4			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARENB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARENB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARENB-14A-02D GS01228-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E08	SRX362969		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARENB-14A-02D GS01228-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60288-FS3_L01.bam	SRR1007111	@dbgap@:reads/SRP012000/SRS489723/SRX362969/SRR1007111/SRR1007111.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFAL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsRecurrent.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsRecurrent.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsRecurrent.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H07	SRX148732		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-04A-01D GS00747-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36672-FS3_L01.bam	SRR499029	@dbgap@:reads/SRP012000/SRS270717/SRX148732/SRR499029/SRR499029.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsPrimary.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsPrimary.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsPrimary.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-03D	DNA	EFO	SRS287496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F07	SRX148733		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-09A-03D GS00747-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34881-FS3_L01.bam	SRR499021	@dbgap@:reads/SRP012000/SRS287496/SRX148733/SRR499021/SRR499021.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsPrimary.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFAL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsRecurrent.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsPrimary.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsRecurrent.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsPrimary.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFAL_NormalVsRecurrent.png	4			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-02D	DNA	EFO	SRS270718	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B06	SRX148731		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFAL-14A-02D GS00943-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41828-FS3_L03.bam	SRR499037	@dbgap@:reads/SRP012000/SRS270718/SRX148731/SRR499037/SRR499037.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFGK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFGK_NormalVsPrimary.png	4			
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFGK_NormalVsPrimary.png	4			
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFGK_NormalVsPrimary.png	4			
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-03D	DNA	EFO	SRS301085	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G10	SRX160099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-09A-03D GS01041-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49056-FS3_L01.bam	SRR521868	@dbgap@:reads/SRP012000/SRS301085/SRX160099/SRR521868/SRR521868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFGK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFGK_NormalVsPrimary.png	4			
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFGK_NormalVsPrimary.png	4			
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFGK_NormalVsPrimary.png	4			
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-14A-01D	DNA	EFO	SRS301086	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H10	SRX160098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFGK-14A-01D GS01041-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49057-FS3_L01.bam	SRR521875	@dbgap@:reads/SRP012000/SRS301086/SRX160098/SRR521875/SRR521875.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFIW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFIW_NormalVsPrimary.png	4			
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFIW_NormalVsPrimary.png	4			
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFIW_NormalVsPrimary.png	4			
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-01D	DNA	EFO	SRS489721	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_F08	SRX362968		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-03A-01D GS01228-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L03.bam	SRR1007090	@dbgap@:reads/SRP012000/SRS489721/SRX362968/SRR1007090/SRR1007090.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFIW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFIW_NormalVsPrimary.png	4			
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFIW_NormalVsPrimary.png	4			
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFIW_NormalVsPrimary.png	4			
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-02D	DNA	EFO	SRS489720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_G08	SRX362967		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFIW-14A-02D GS01228-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60290-FS3_L01.bam	SRR1007097	@dbgap@:reads/SRP012000/SRS489720/SRX362967/SRR1007097/SRR1007097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFRN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFRN_NormalVsPrimary.png	4			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFRN_NormalVsPrimary.png	4			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFRN_NormalVsPrimary.png	4			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-09A-03D	DNA	EFO	SRS301087	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A11	SRX160656		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-09A-03D GS01041-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L01.bam	SRR524074	@dbgap@:reads/SRP012000/SRS301087/SRX160656/SRR524074/SRR524074.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFRN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFRN_NormalVsPrimary.png	4			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFRN_NormalVsPrimary.png	4			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFRN_NormalVsPrimary.png	4			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFRN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFRN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_C11	SRX160655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFRN-14A-01D GS01041-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49055-FS3_L01.bam	SRR524081	@dbgap@:reads/SRP012000/SRS301088/SRX160655/SRR524081/SRR524081.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFXF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFXF_NormalVsPrimary.png	4			
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFXF_NormalVsPrimary.png	4			
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFXF_NormalVsPrimary.png	4			
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C06	SRX363158		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-09A-01D GS01241-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L03.bam	SRR1008421	@dbgap@:reads/SRP012000/SRS489886/SRX363158/SRR1008421/SRR1008421.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARFXF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFXF_NormalVsPrimary.png	4			
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFXF_NormalVsPrimary.png	4			
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARFXF_NormalVsPrimary.png	4			
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARFXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARFXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_G12	SRX363157		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARFXF-14A-01D GS01962-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62290-FS3_L01.bam	SRR1008427	@dbgap@:reads/SRP012000/SRS489885/SRX363157/SRR1008427/SRR1008427.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARGDB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsPrimary.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsPrimary.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsPrimary.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_H03	SRX363145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-03A-01D GS01969-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62241-FS3_L01.bam	SRR1008321	@dbgap@:reads/SRP012000/SRS489873/SRX363145/SRR1008321/SRR1008321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARGDB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsRecurrent.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsRecurrent.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsRecurrent.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_G02	SRX363144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-04A-03D GS01969-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62237-FS3_L01.bam	SRR1008328	@dbgap@:reads/SRP012000/SRS489872/SRX363144/SRR1008328/SRR1008328.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARGDB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsPrimary.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARGDB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsRecurrent.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsPrimary.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsRecurrent.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsPrimary.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGDB_NormalVsRecurrent.png	4			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGDB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGDB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-10A-02D	DNA	EFO	SRS489871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_F02	SRX363143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGDB-10A-02D GS01969-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62490-FS3_L01.bam	SRR1008335	@dbgap@:reads/SRP012000/SRS489871/SRX363143/SRR1008335/SRR1008335.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARGVC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGVC_NormalVsPrimary.png	4			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGVC_NormalVsPrimary.png	4			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGVC_NormalVsPrimary.png	4			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-04D	DNA	EFO	SRS332255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G08	SRX160082		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-03A-04D GS01044-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48872-FS3_L01.bam	SRR521744	@dbgap@:reads/SRP012000/SRS332255/SRX160082/SRR521744/SRR521744.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARGVC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGVC_NormalVsPrimary.png	4			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGVC_NormalVsPrimary.png	4			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARGVC_NormalVsPrimary.png	4			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARGVC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARGVC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-02D	DNA	EFO	SRS270720	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H08	SRX160081		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARGVC-14A-02D GS01044-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48871-FS3_L01.bam	SRR521751	@dbgap@:reads/SRP012000/SRS270720/SRX160081/SRR521751/SRR521751.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARHVK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARHVK_NormalVsPrimary.png	4			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARHVK_NormalVsPrimary.png	4			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARHVK_NormalVsPrimary.png	4			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-01D	DNA	EFO	SRS118047	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A09	SRX129987		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-09A-01D GS00662-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19115-FS3_L01.bam	SRR445584	@dbgap@:reads/SRP012000/SRS118047/SRX129987/SRR445584/SRR445584.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARHVK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARHVK_NormalVsPrimary.png	4			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARHVK_NormalVsPrimary.png	4			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARHVK_NormalVsPrimary.png	4			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARHVK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARHVK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B01	SRX129986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARHVK-14A-01D GS00662-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18183-FS3_L01.bam	SRR445592	@dbgap@:reads/SRP012000/SRS118048/SRX129986/SRR445592/SRR445592.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIEG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIEG_NormalVsPrimary.png	4			
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIEG_NormalVsPrimary.png	4			
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIEG_NormalVsPrimary.png	4			
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-04D	DNA	EFO	SRS374015	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B12	SRX202697		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-09A-04D GS01087-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52359-FS3_L01.bam	SRR610936	@dbgap@:reads/SRP012000/SRS374015/SRX202697/SRR610936/SRR610936.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIEG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIEG_NormalVsPrimary.png	4			
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIEG_NormalVsPrimary.png	4			
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIEG_NormalVsPrimary.png	4			
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_E07	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS01004-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIEG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIEG_NormalVsPrimary.png	4			
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIEG_NormalVsPrimary.png	4			
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIEG_NormalVsPrimary.png	4			
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIEG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIEG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-02D	DNA	EFO	SRS270722	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A09	SRX202696		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIEG-14A-02D GS00943-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47329-FS3_L01.bam	SRR610943	@dbgap@:reads/SRP012000/SRS270722/SRX202696/SRR610943/SRR610943.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIHK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsRecurrent.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsRecurrent.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsRecurrent.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-04A-02D	DNA	EFO	SRS270723	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F06	SRX149447		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-04A-02D GS00790-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37684-FS3_L01.bam	SRR500564	@dbgap@:reads/SRP012000/SRS270723/SRX149447/SRR500564/SRR500564.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIHK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsPrimary.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsPrimary.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsPrimary.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-09A-02D	DNA	EFO	SRS270724	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D07	SRX149446		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-09A-02D GS00792-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37683-FS3_L01.bam	SRR500572	@dbgap@:reads/SRP012000/SRS270724/SRX149446/SRR500572/SRR500572.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIHK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsPrimary.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIHK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsRecurrent.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsPrimary.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsRecurrent.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsPrimary.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIHK_NormalVsRecurrent.png	4			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-02D	DNA	EFO	SRS270725	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A08	SRX149445		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIHK-14A-02D GS01004-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44414-FS3_L01.bam	SRR500580	@dbgap@:reads/SRP012000/SRS270725/SRX149445/SRR500580/SRR500580.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIMT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsRecurrent.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsRecurrent.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsRecurrent.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-04A-01D	DNA	EFO	SRS489694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_C02	SRX362941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-04A-01D GS01950-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60932-FS3_L01.bam	SRR1006908	@dbgap@:reads/SRP012000/SRS489694/SRX362941/SRR1006908/SRR1006908.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIMT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsPrimary.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsPrimary.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsPrimary.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-09A-01D	DNA	EFO	SRS287499	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G07	SRX144676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-09A-01D GS00943-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41632-FS3_L01.bam	SRR491320	@dbgap@:reads/SRP012000/SRS287499/SRX144676/SRR491320/SRR491320.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIMT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsPrimary.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIMT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsRecurrent.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsPrimary.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsRecurrent.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsPrimary.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIMT_NormalVsRecurrent.png	4			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIMT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIMT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-10A-01D	DNA	EFO	SRS270727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D12	SRX144675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIMT-10A-01D GS00747-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36669-FS3_L01.bam	SRR491327	@dbgap@:reads/SRP012000/SRS270727/SRX144675/SRR491327/SRR491327.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIZR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIZR_NormalVsPrimary.png	4			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIZR_NormalVsPrimary.png	4			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIZR_NormalVsPrimary.png	4			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-09A-02D	DNA	EFO	SRS301089	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_D11	SRX159773		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-09A-02D GS01041-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49060-FS3_L01.bam	SRR521305	@dbgap@:reads/SRP012000/SRS301089/SRX159773/SRR521305/SRR521305.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARIZR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIZR_NormalVsPrimary.png	4			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIZR_NormalVsPrimary.png	4			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARIZR_NormalVsPrimary.png	4			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARIZR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARIZR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_E11	SRX159772		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARIZR-14A-01D GS01041-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49054-FS3_L03.bam	SRR521311	@dbgap@:reads/SRP012000/SRS301090/SRX159772/SRR521311/SRR521311.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARJCR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsRecurrent.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsRecurrent.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsRecurrent.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-04A-02D	DNA	EFO	SRS301091	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C07	SRX171651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-04A-02D GS01044-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47500-FS3_L01.bam	SRR529548	@dbgap@:reads/SRP012000/SRS301091/SRX171651/SRR529548/SRR529548.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARJCR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsPrimary.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsPrimary.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsPrimary.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-02D	DNA	EFO	SRS301092	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A07	SRX171650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-09A-02D GS01044-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49018-FS3_L01.bam	SRR529557	@dbgap@:reads/SRP012000/SRS301092/SRX171650/SRR529557/SRR529557.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARJCR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsPrimary.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARJCR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsRecurrent.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsPrimary.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsRecurrent.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsPrimary.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJCR_NormalVsRecurrent.png	4			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJCR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJCR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-01D	DNA	EFO	SRS301093	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B07	SRX171649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJCR-14A-01D GS01044-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49017-FS3_L01.bam	SRR529564	@dbgap@:reads/SRP012000/SRS301093/SRX171649/SRR529564/SRR529564.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARJYP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJYP_NormalVsPrimary.png	4			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJYP_NormalVsPrimary.png	4			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJYP_NormalVsPrimary.png	4			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_H08	SRX362918		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-03A-01D GS01228-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60292-FS3_L01.bam	SRR1006739	@dbgap@:reads/SRP012000/SRS489671/SRX362918/SRR1006739/SRR1006739.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARJYP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJYP_NormalVsPrimary.png	4			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJYP_NormalVsPrimary.png	4			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARJYP_NormalVsPrimary.png	4			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARJYP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARJYP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-02D	DNA	EFO	SRS489670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A09	SRX362917		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARJYP-14A-02D GS01228-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60291-FS3_L01.bam	SRR1006746	@dbgap@:reads/SRP012000/SRS489670/SRX362917/SRR1006746/SRR1006746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARKCX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARKCX_NormalVsPrimary.png	4			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARKCX_NormalVsPrimary.png	4			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARKCX_NormalVsPrimary.png	4			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-02D	DNA	EFO	SRS301094	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_F11	SRX159799		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-09A-02D GS01041-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48666-FS3_L01.bam	SRR521319	@dbgap@:reads/SRP012000/SRS301094/SRX159799/SRR521319/SRR521319.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARKCX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARKCX_NormalVsPrimary.png	4			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARKCX_NormalVsPrimary.png	4			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARKCX_NormalVsPrimary.png	4			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARKCX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARKCX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G11	SRX159798		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARKCX-14A-01D GS01041-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48337-FS3_L01.bam	SRR521326	@dbgap@:reads/SRP012000/SRS301095/SRX159798/SRR521326/SRR521326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARLVL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsRecurrent.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsRecurrent.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsRecurrent.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_D02	SRX362939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-04A-01D GS01950-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60931-FS3_L01.bam	SRR1006893	@dbgap@:reads/SRP012000/SRS489692/SRX362939/SRR1006893/SRR1006893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARLVL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E12	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00747-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARLVL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-03D	DNA	EFO	SRS287500	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H07	SRX148768		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-09A-03D GS00943-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41991-FS3_L01.bam	SRR499658	@dbgap@:reads/SRP012000/SRS287500/SRX148768/SRR499658/SRR499658.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARLVL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARLVL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsRecurrent.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsRecurrent.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsRecurrent.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F12	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00747-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARLVL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARLVL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsRecurrent.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsRecurrent.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsPrimary.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARLVL_NormalVsRecurrent.png	4			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARLVL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARLVL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-02D	DNA	EFO	SRS270729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A08	SRX148767		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARLVL-14A-02D GS00943-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43046-FS3_L01.bam	SRR499665	@dbgap@:reads/SRP012000/SRS270729/SRX148767/SRR499665/SRR499665.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARMGX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMGX_NormalVsPrimary.png	4			
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMGX_NormalVsPrimary.png	4			
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMGX_NormalVsPrimary.png	4			
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-09A-02D	DNA	EFO	SRS270730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F08	SRX202419		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-09A-02D GS00943-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41626-FS3_L01.bam	SRR610633	@dbgap@:reads/SRP012000/SRS270730/SRX202419/SRR610633/SRR610633.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARMGX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMGX_NormalVsPrimary.png	4			
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMGX_NormalVsPrimary.png	4			
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMGX_NormalVsPrimary.png	4			
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARMGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGX-14A-02D	DNA	EFO	SRS373868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A12	SRX202418		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMGX-14A-02D GS01087-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52804-FS3_L01.bam	SRR610641	@dbgap@:reads/SRP012000/SRS373868/SRX202418/SRR610641/SRR610641.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARMZF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsPrimary.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsPrimary.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsPrimary.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_F02	SRX170571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-09A-02D GS01046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47502-FS3_L01.bam	SRR526185	@dbgap@:reads/SRP012000/SRS301096/SRX170571/SRR526185/SRR526185.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARMZF_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsNormalFibroblast.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARMZF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsPrimary.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsNormalFibroblast.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsPrimary.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsNormalFibroblast.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsPrimary.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-01D	DNA	EFO	SRS301097	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_G02	SRX170570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-14A-01D GS01046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47501-FS3_L01.bam	SRR526192	@dbgap@:reads/SRP012000/SRS301097/SRX170570/SRR526192/SRR526192.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARMZF_NormalVsNormalFibroblast.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsNormalFibroblast.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsNormalFibroblast.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARMZF_NormalVsNormalFibroblast.png	4			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARMZF_NormalVsNormalFibroblast.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARMZF_NormalVsNormalFibroblast.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-15A-01D	DNA	EFO	SRS489702	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E03	SRX362949		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARMZF-15A-01D GS01950-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60681-FS3_L01.bam	SRR1006965	@dbgap@:reads/SRP012000/SRS489702/SRX362949/SRR1006965/SRR1006965.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARNIA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsRecurrent.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsRecurrent.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsRecurrent.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-01D	DNA	EFO	SRS270732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G08	SRX121869		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-04A-01D GS00790-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37166-FS3_L01.bam	SRR413430	@dbgap@:reads/SRP012000/SRS270732/SRX121869/SRR413430/SRR413430.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARNIA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsPrimary.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsPrimary.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsPrimary.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-03D	DNA	EFO	SRS270733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D03	SRX121870		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-09A-03D GS00790-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37167-FS3_L01.bam	SRR413423	@dbgap@:reads/SRP012000/SRS270733/SRX121870/SRR413423/SRR413423.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARNIA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsPrimary.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARNIA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsRecurrent.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsPrimary.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsRecurrent.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsPrimary.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNIA_NormalVsRecurrent.png	4			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNIA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNIA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-02D	DNA	EFO	SRS270734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G05	SRX121868		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNIA-14A-02D GS00790-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36781-FS3_L01.bam	SRR413437	@dbgap@:reads/SRP012000/SRS270734/SRX121868/SRR413437/SRR413437.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARNNT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNNT_NormalVsPrimary.png	4			
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNNT_NormalVsPrimary.png	4			
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNNT_NormalVsPrimary.png	4			
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B09	SRX362953		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-09A-01D GS01228-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60294-FS3_L01.bam	SRR1006985	@dbgap@:reads/SRP012000/SRS489706/SRX362953/SRR1006985/SRR1006985.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARNNT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNNT_NormalVsPrimary.png	4			
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNNT_NormalVsPrimary.png	4			
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNNT_NormalVsPrimary.png	4			
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNNT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNNT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-10A-02D	DNA	EFO	SRS489705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_C09	SRX362952		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNNT-10A-02D GS01228-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60293-FS3_L01.bam	SRR1006992	@dbgap@:reads/SRP012000/SRS489705/SRX362952/SRR1006992/SRR1006992.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARNZW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsPrimary.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsPrimary.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsPrimary.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-03A-03D	DNA	EFO	SRS270735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E09	SRX149689		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-03A-03D GS00792-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37675-FS3_L01.bam	SRR501017	@dbgap@:reads/SRP012000/SRS270735/SRX149689/SRR501017/SRR501017.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARNZW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsPrimary.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARNZW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsRecurrent.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsPrimary.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsRecurrent.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsPrimary.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsRecurrent.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-14A-02D	DNA	EFO	SRS270736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D08	SRX149688		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-14A-02D GS00790-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37674-FS3_L01.bam	SRR501025	@dbgap@:reads/SRP012000/SRS270736/SRX149688/SRR501025/SRR501025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARNZW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsRecurrent.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsRecurrent.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARNZW_NormalVsRecurrent.png	4			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARNZW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARNZW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-01D	DNA	EFO	SRS270737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F06	SRX149690		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARNZW-40A-01D GS01004-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44418-FS3_L01.bam	SRR501010	@dbgap@:reads/SRP012000/SRS270737/SRX149690/SRR501010/SRR501010.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPDS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsRecurrent.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsRecurrent.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsRecurrent.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-01D	DNA	EFO	SRS301098	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D03	SRX171568		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-04A-01D GS01044-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L03.bam	SRR529054	@dbgap@:reads/SRP012000/SRS301098/SRX171568/SRR529054/SRR529054.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPDS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsPrimary.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsPrimary.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsPrimary.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B03	SRX171569		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-09A-01D GS01044-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48935-FS3_L01.bam	SRR529046	@dbgap@:reads/SRP012000/SRS301099/SRX171569/SRR529046/SRR529046.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPDS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsPrimary.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPDS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsRecurrent.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsPrimary.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsRecurrent.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsPrimary.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPDS_NormalVsRecurrent.png	4			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPDS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPDS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-02D	DNA	EFO	SRS301100	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C03	SRX171567		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPDS-14A-02D GS01044-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48936-FS3_L01.bam	SRR529061	@dbgap@:reads/SRP012000/SRS301100/SRX171567/SRR529061/SRR529061.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPPY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsPrimary.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsPrimary.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsPrimary.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-09A-02D	DNA	EFO	SRS287501	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B09	SRX148664		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-09A-02D GS00747-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36126-FS3_L01.bam	SRR498310	@dbgap@:reads/SRP012000/SRS287501/SRX148664/SRR498310/SRR498310.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPPY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsPrimary.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPPY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsPrimary.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsPrimary.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F06	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00943-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPPY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsPrimary.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPPY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsPrimary.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsPrimary.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-01D	DNA	EFO	SRS270740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C09	SRX148662		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-14A-01D GS00747-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41434-FS3_L01.bam	SRR498326	@dbgap@:reads/SRP012000/SRS270740/SRX148662/SRR498326/SRR498326.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPPY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D09	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00747-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPPY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPPY_NormalVsRecurrent.png	4			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPPY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPPY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-01D	DNA	EFO	SRS332256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H06	SRX148663		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPPY-40A-01D GS00943-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40350-FS3_L01.bam	SRR498318	@dbgap@:reads/SRP012000/SRS332256/SRX148663/SRR498318/SRR498318.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPWL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPWL_NormalVsPrimary.png	4			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPWL_NormalVsPrimary.png	4			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPWL_NormalVsPrimary.png	4			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-02D	DNA	EFO	SRS301101	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F02	SRX176552		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-09A-02D GS01042-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48669-FS3_L01.bam	SRR538856	@dbgap@:reads/SRP012000/SRS301101/SRX176552/SRR538856/SRR538856.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARPWL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPWL_NormalVsPrimary.png	4			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPWL_NormalVsPrimary.png	4			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARPWL_NormalVsPrimary.png	4			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARPWL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARPWL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-01D	DNA	EFO	SRS301102	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G02	SRX176551		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARPWL-14A-01D GS01042-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48338-FS3_L01.bam	SRR538863	@dbgap@:reads/SRP012000/SRS301102/SRX176551/SRR538863/SRR538863.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARSAN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsRecurrent.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsRecurrent.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsRecurrent.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04B-01D	DNA	EFO	SRS301103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F08	SRX171618		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-04B-01D GS01044-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48866-FS3_L01.bam	SRR529265	@dbgap@:reads/SRP012000/SRS301103/SRX171618/SRR529265/SRR529265.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARSAN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsPrimary.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsPrimary.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsPrimary.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D02	SRX171617		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-09A-01D GS01044-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48864-FS3_L01.bam	SRR529272	@dbgap@:reads/SRP012000/SRS270742/SRX171617/SRR529272/SRR529272.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARSAN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsPrimary.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARSAN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsRecurrent.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsPrimary.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsRecurrent.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsPrimary.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSAN_NormalVsRecurrent.png	4			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSAN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSAN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-02D	DNA	EFO	SRS270743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E02	SRX171616		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSAN-14A-02D GS01044-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48865-FS3_L01.bam	SRR529279	@dbgap@:reads/SRP012000/SRS270743/SRX171616/SRR529279/SRR529279.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARSHM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsPrimary.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsPrimary.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsPrimary.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02D	DNA	EFO	SRS270744	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C09	SRX149604		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-03A-02D GS00792-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38363-FS3_L01.bam	SRR500848	@dbgap@:reads/SRP012000/SRS270744/SRX149604/SRR500848/SRR500848.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARSHM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsRecurrent.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsRecurrent.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsRecurrent.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-01D	DNA	EFO	SRS270745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_C07	SRX149603		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-04A-01D GS01004-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44413-FS3_L01.bam	SRR500855	@dbgap@:reads/SRP012000/SRS270745/SRX149603/SRR500855/SRR500855.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARSHM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsPrimary.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARSHM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsRecurrent.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsPrimary.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsRecurrent.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsPrimary.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARSHM_NormalVsRecurrent.png	4			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARSHM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARSHM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E11	SRX149602		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARSHM-14A-01D GS00790-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39417-FS3_L01.bam	SRR500863	@dbgap@:reads/SRP012000/SRS270746/SRX149602/SRR500863/SRR500863.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARTAL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsRecurrent.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsRecurrent.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsRecurrent.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-02D	DNA	EFO	SRS489650	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B11	SRX362895		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-04A-02D GS01087-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52603-FS3_L01.bam	SRR1006531	@dbgap@:reads/SRP012000/SRS489650/SRX362895/SRR1006531/SRR1006531.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARTAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsPrimary.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsPrimary.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsPrimary.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-01D	DNA	EFO	SRS301105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E02	SRX362896		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-09A-01D GS01087-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53111-FS3_L01.bam	SRR1006523	@dbgap@:reads/SRP012000/SRS301105/SRX362896/SRR1006523/SRR1006523.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARTAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsPrimary.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARTAL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsRecurrent.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsPrimary.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsRecurrent.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsPrimary.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARTAL_NormalVsRecurrent.png	4			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARTAL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARTAL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-02D	DNA	EFO	SRS301106	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F02	SRX362894		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARTAL-14A-02D GS01087-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58974-FS3_L01.bam	SRR1006539	@dbgap@:reads/SRP012000/SRS301106/SRX362894/SRR1006539/SRR1006539.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUBT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsRecurrent.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsRecurrent.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsRecurrent.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-04A-01D	DNA	EFO	SRS301107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_D03	SRX171659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-04A-01D GS01046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49260-FS3_L08.bam	SRR529634	@dbgap@:reads/SRP012000/SRS301107/SRX171659/SRR529634/SRR529634.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUBT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsPrimary.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsPrimary.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsPrimary.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02D	DNA	EFO	SRS301108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B03	SRX171660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-09A-02D GS01046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47508-FS3_L01.bam	SRR529627	@dbgap@:reads/SRP012000/SRS301108/SRX171660/SRR529627/SRR529627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUBT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsPrimary.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUBT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsRecurrent.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsPrimary.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsRecurrent.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsPrimary.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUBT_NormalVsRecurrent.png	4			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUBT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUBT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-14A-02D	DNA	EFO	SRS301109	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C03	SRX171658		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUBT-14A-02D GS01046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47507-FS3_L01.bam	SRR529639	@dbgap@:reads/SRP012000/SRS301109/SRX171658/SRR529639/SRR529639.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUDL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUDL_NormalVsPrimary.png	4			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUDL_NormalVsPrimary.png	4			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUDL_NormalVsPrimary.png	4			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-09A-01D	DNA	EFO	SRS270747	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D11	SRX120313		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-09A-01D GS00790-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36046-FS3_L01.bam	SRR408837	@dbgap@:reads/SRP012000/SRS270747/SRX120313/SRR408837/SRR408837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUDL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUDL_NormalVsPrimary.png	4			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUDL_NormalVsPrimary.png	4			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUDL_NormalVsPrimary.png	4			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E08	SRX120312		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUDL-14A-01D GS00790-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36048-FS3_L01.bam	SRR408845	@dbgap@:reads/SRP012000/SRS270748/SRX120312/SRR408845/SRR408845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUNX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsRecurrent.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsRecurrent.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsRecurrent.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_C02	SRX184914		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-04A-01D GS01068-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51160-FS3_L01.bam	SRR561741	@dbgap@:reads/SRP012000/SRS160303/SRX184914/SRR561741/SRR561741.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUNX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsPrimary.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsPrimary.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsPrimary.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A02	SRX184915		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-09A-01D GS01068-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51226-FS3_L01.bam	SRR561734	@dbgap@:reads/SRP012000/SRS287503/SRX184915/SRR561734/SRR561734.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUNX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsPrimary.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUNX_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsRecurrent.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsPrimary.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsRecurrent.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsPrimary.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUNX_NormalVsRecurrent.png	4			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUNX_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUNX_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-02D	DNA	EFO	SRS301110	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_B02	SRX184913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUNX-14A-02D GS01068-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51411-FS3_L01.bam	SRR561748	@dbgap@:reads/SRP012000/SRS301110/SRX184913/SRR561748/SRR561748.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUTH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsRecurrent.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsRecurrent.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsRecurrent.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-04A-01D	DNA	EFO	SRS489696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01950-CLS_E02	SRX362943		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-04A-01D GS01950-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60687-FS3_L01.bam	SRR1006922	@dbgap@:reads/SRP012000/SRS489696/SRX362943/SRR1006922/SRR1006922.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUTH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsPrimary.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsPrimary.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsPrimary.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01D	DNA	EFO	SRS118049	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_G02	SRX128370		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-09A-01D GS00661-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17792-FS3_L01.bam	SRR442736	@dbgap@:reads/SRP012000/SRS118049/SRX128370/SRR442736/SRR442736.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUTH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsPrimary.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUTH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsRecurrent.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsPrimary.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsRecurrent.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsPrimary.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUTH_NormalVsRecurrent.png	4			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUTH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUTH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-01D	DNA	EFO	SRS118050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00661-CLS_F05	SRX128369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUTH-14A-01D GS00661-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17870-FS3_L01.bam	SRR442744	@dbgap@:reads/SRP012000/SRS118050/SRX128369/SRR442744/SRR442744.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUUB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUUB_NormalVsPrimary.png	4			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUUB_NormalVsPrimary.png	4			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUUB_NormalVsPrimary.png	4			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02D	DNA	EFO	SRS489660	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_D09	SRX362907		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-09A-02D GS01228-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58462-FS3_L01.bam	SRR1006659	@dbgap@:reads/SRP012000/SRS489660/SRX362907/SRR1006659/SRR1006659.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUUB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUUB_NormalVsPrimary.png	4			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUUB_NormalVsPrimary.png	4			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUUB_NormalVsPrimary.png	4			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-01D	DNA	EFO	SRS489659	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_E09	SRX362906		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUUB-14A-01D GS01228-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58461-FS3_L01.bam	SRR1006666	@dbgap@:reads/SRP012000/SRS489659/SRX362906/SRR1006666/SRR1006666.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUWX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUWX_NormalVsPrimary.png	4			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUWX_NormalVsPrimary.png	4			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUWX_NormalVsPrimary.png	4			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-01D	DNA	EFO	SRS270749	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E08	SRX144649		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-09A-01D GS00943-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41627-FS3_L01.bam	SRR491198	@dbgap@:reads/SRP012000/SRS270749/SRX144649/SRR491198/SRR491198.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARUWX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUWX_NormalVsPrimary.png	4			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUWX_NormalVsPrimary.png	4			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARUWX_NormalVsPrimary.png	4			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARUWX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARUWX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-01D	DNA	EFO	SRS270750	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_C12	SRX144648		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARUWX-14A-01D GS00792-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38496-FS3_L01.bam	SRR491205	@dbgap@:reads/SRP012000/SRS270750/SRX144648/SRR491205/SRR491205.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARVAI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARVAI_NormalVsPrimary.png	4			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARVAI_NormalVsPrimary.png	4			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARVAI_NormalVsPrimary.png	4			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-09A-02D	DNA	EFO	SRS270751	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D02	SRX191103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-09A-02D GS01087-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52958-FS3_L01.bam	SRR579412	@dbgap@:reads/SRP012000/SRS270751/SRX191103/SRR579412/SRR579412.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARVAI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARVAI_NormalVsPrimary.png	4			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARVAI_NormalVsPrimary.png	4			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARVAI_NormalVsPrimary.png	4			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARVAI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARVAI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C12	SRX191102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARVAI-14A-01D GS01087-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52933-FS3_L01.bam	SRR579420	@dbgap@:reads/SRP012000/SRS270752/SRX191102/SRR579420/SRR579420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARWDZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsRecurrent.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsRecurrent.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsRecurrent.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-02D	DNA	EFO	SRS373865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E11	SRX202412		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-04A-02D GS01087-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53617-FS3_L03.bam	SRR610569	@dbgap@:reads/SRP012000/SRS373865/SRX202412/SRR610569/SRR610569.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARWDZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsPrimary.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsPrimary.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsPrimary.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-03D	DNA	EFO	SRS301112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C03	SRX202411		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-09A-03D GS01087-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52998-FS3_L01.bam	SRR610576	@dbgap@:reads/SRP012000/SRS301112/SRX202411/SRR610576/SRR610576.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARWDZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsPrimary.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARWDZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsRecurrent.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsPrimary.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsRecurrent.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsPrimary.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARWDZ_NormalVsRecurrent.png	4			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARWDZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARWDZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D03	SRX202410		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARWDZ-14A-01D GS01087-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52999-FS3_L01.bam	SRR610584	@dbgap@:reads/SRP012000/SRS301113/SRX202410/SRR610584/SRR610584.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARXMP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXMP_NormalVsPrimary.png	4			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXMP_NormalVsPrimary.png	4			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXMP_NormalVsPrimary.png	4			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_A02	SRX387819		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-09A-01D GS02050-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69943-FS3_L01.bam	SRR1044018	@dbgap@:reads/SRP012000/SRS511710/SRX387819/SRR1044018/SRR1044018.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARXMP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXMP_NormalVsPrimary.png	4			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXMP_NormalVsPrimary.png	4			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXMP_NormalVsPrimary.png	4			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXMP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXMP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-03D	DNA	EFO	SRS614733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_G02	SRX387818		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXMP-14A-03D GS02050-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70004-FS3_L01.bam	SRR1044025	@dbgap@:reads/SRP012000/SRS614733/SRX387818/SRR1044025/SRR1044025.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARXNG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXNG_NormalVsPrimary.png	4			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXNG_NormalVsPrimary.png	4			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXNG_NormalVsPrimary.png	4			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-04D	DNA	EFO	SRS489878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_A10	SRX363150		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-09A-04D GS01228-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60387-FS3_L01.bam	SRR1008363	@dbgap@:reads/SRP012000/SRS489878/SRX363150/SRR1008363/SRR1008363.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARXNG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXNG_NormalVsPrimary.png	4			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXNG_NormalVsPrimary.png	4			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARXNG_NormalVsPrimary.png	4			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARXNG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARXNG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-02D	DNA	EFO	SRS489877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01228-CLS_B10	SRX363149		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARXNG-14A-02D GS01228-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS61885-FS3_L01.bam	SRR1008370	@dbgap@:reads/SRP012000/SRS489877/SRX363149/SRR1008370/SRR1008370.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARYFN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsPrimary.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsPrimary.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsPrimary.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01D	DNA	EFO	SRS270753	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A08	SRX122381		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-03A-01D GS00747-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34880-FS3_L01.bam	SRR414313	@dbgap@:reads/SRP012000/SRS270753/SRX122381/SRR414313/SRR414313.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARYFN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsRecurrent.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsRecurrent.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsRecurrent.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_C08	SRX122380		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-04A-01D GS00747-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36120-FS3_L01.bam	SRR414321	@dbgap@:reads/SRP012000/SRS270754/SRX122380/SRR414321/SRR414321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARYFN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsPrimary.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARYFN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsRecurrent.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsPrimary.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsRecurrent.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsPrimary.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYFN_NormalVsRecurrent.png	4			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYFN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYFN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B08	SRX122379		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYFN-14A-01D GS00747-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36121-FS3_L01.bam	SRR414329	@dbgap@:reads/SRP012000/SRS270755/SRX122379/SRR414329/SRR414329.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARYGA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYGA_NormalVsPrimary.png	4			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYGA_NormalVsPrimary.png	4			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYGA_NormalVsPrimary.png	4			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-04D	DNA	EFO	SRS489735	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D02	SRX362982		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-09A-04D GS01241-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60463-FS3_L01.bam	SRR1007188	@dbgap@:reads/SRP012000/SRS489735/SRX362982/SRR1007188/SRR1007188.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARYGA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYGA_NormalVsPrimary.png	4			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYGA_NormalVsPrimary.png	4			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYGA_NormalVsPrimary.png	4			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-02D	DNA	EFO	SRS489734	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E02	SRX362981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYGA-14A-02D GS01241-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60435-FS3_L01.bam	SRR1007196	@dbgap@:reads/SRP012000/SRS489734/SRX362981/SRR1007196/SRR1007196.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARYVW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsRecurrent.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsRecurrent.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsRecurrent.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F07	SRX171623		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-04A-02D GS01044-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49253-FS3_L01.bam	SRR529314	@dbgap@:reads/SRP012000/SRS301114/SRX171623/SRR529314/SRR529314.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARYVW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsPrimary.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsPrimary.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsPrimary.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D07	SRX171624		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-09A-01D GS01044-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49252-FS3_L01.bam	SRR529307	@dbgap@:reads/SRP012000/SRS301115/SRX171624/SRR529307/SRR529307.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARYVW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsPrimary.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARYVW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsRecurrent.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsPrimary.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsRecurrent.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsPrimary.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARYVW_NormalVsRecurrent.png	4			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARYVW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARYVW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E07	SRX171622		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARYVW-14A-01D GS01044-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49251-FS3_L01.bam	SRR529321	@dbgap@:reads/SRP012000/SRS301116/SRX171622/SRR529321/SRR529321.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARZUU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZUU_NormalVsPrimary.png	4			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZUU_NormalVsPrimary.png	4			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZUU_NormalVsPrimary.png	4			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01D	DNA	EFO	SRS118051	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_A08	SRX130068		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-09A-01D GS00662-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19118-FS3_L01.bam	SRR445837	@dbgap@:reads/SRP012000/SRS118051/SRX130068/SRR445837/SRR445837.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARZUU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZUU_NormalVsPrimary.png	4			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZUU_NormalVsPrimary.png	4			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZUU_NormalVsPrimary.png	4			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZUU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZUU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_D08	SRX130067		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZUU-14A-01D GS00662-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18954-FS3_L01.bam	SRR445845	@dbgap@:reads/SRP012000/SRS118052/SRX130067/SRR445845/SRR445845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARZWH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZWH_NormalVsPrimary.png	4			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZWH_NormalVsPrimary.png	4			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZWH_NormalVsPrimary.png	4			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03D	DNA	EFO	SRS494302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B02	SRX368262		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-09A-03D GS02040-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66978-FS3_L01.bam	SRR1017507	@dbgap@:reads/SRP012000/SRS494302/SRX368262/SRR1017507/SRR1017507.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PARZWH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZWH_NormalVsPrimary.png	4			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZWH_NormalVsPrimary.png	4			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PARZWH_NormalVsPrimary.png	4			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PARZWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PARZWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-03D	DNA	EFO	SRS494301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G04	SRX368261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PARZWH-14A-03D GS02040-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66167-FS3_L01.bam	SRR1017514	@dbgap@:reads/SRP012000/SRS494301/SRX368261/SRR1017514/SRR1017514.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASAUT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASAUT_NormalVsPrimary.png	4			
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASAUT_NormalVsPrimary.png	4			
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASAUT_NormalVsPrimary.png	4			
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-01D	DNA	EFO	SRS489710	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F02	SRX362957		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-03A-01D GS01241-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60531-FS3_L01.bam	SRR1007012	@dbgap@:reads/SRP012000/SRS489710/SRX362957/SRR1007012/SRR1007012.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASAUT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASAUT_NormalVsPrimary.png	4			
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASAUT_NormalVsPrimary.png	4			
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASAUT_NormalVsPrimary.png	4			
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASAUT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASAUT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G02	SRX362956		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASAUT-14A-01D GS01241-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60530-FS3_L01.bam	SRR1007019	@dbgap@:reads/SRP012000/SRS489709/SRX362956/SRR1007019/SRR1007019.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBBE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsRecurrent.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsRecurrent.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsRecurrent.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02D	DNA	EFO	SRS270757	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G09	SRX144785		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-04A-02D GS00747-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36127-FS3_L01.bam	SRR491683	@dbgap@:reads/SRP012000/SRS270757/SRX144785/SRR491683/SRR491683.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBBE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E09	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00747-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBBE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-01D	DNA	EFO	SRS287508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A07	SRX144786		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-09A-01D GS00943-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40351-FS3_L01.bam	SRR491676	@dbgap@:reads/SRP012000/SRS287508/SRX144786/SRR491676/SRR491676.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBBE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBBE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsRecurrent.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsRecurrent.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsRecurrent.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B07	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00943-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBBE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBBE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsRecurrent.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsRecurrent.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsPrimary.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBBE_NormalVsRecurrent.png	4			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBBE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBBE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F09	SRX144784		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBBE-14A-01D GS00747-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40352-FS3_L01.bam	SRR491691	@dbgap@:reads/SRP012000/SRS270758/SRX144784/SRR491691/SRR491691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBHI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBHI_NormalVsPrimary.png	4			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBHI_NormalVsPrimary.png	4			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBHI_NormalVsPrimary.png	4			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01D	DNA	EFO	SRS301117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H02	SRX170584		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-09A-01D GS01042-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L03.bam	SRR525739	@dbgap@:reads/SRP012000/SRS301117/SRX170584/SRR525739/SRR525739.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBHI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBHI_NormalVsPrimary.png	4			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBHI_NormalVsPrimary.png	4			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBHI_NormalVsPrimary.png	4			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBHI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBHI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A03	SRX170583		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBHI-14A-01D GS01042-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48670-FS3_L01.bam	SRR525746	@dbgap@:reads/SRP012000/SRS301118/SRX170583/SRR525746/SRR525746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBPK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBPK_NormalVsPrimary.png	4			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBPK_NormalVsPrimary.png	4			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBPK_NormalVsPrimary.png	4			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F08	SRX129638		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-09A-01D GS00662-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19117-FS3_L01.bam	SRR445092	@dbgap@:reads/SRP012000/SRS118053/SRX129638/SRR445092/SRR445092.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASBPK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBPK_NormalVsPrimary.png	4			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBPK_NormalVsPrimary.png	4			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASBPK_NormalVsPrimary.png	4			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASBPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASBPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_H08	SRX129637		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASBPK-14A-01D GS00662-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18953-FS3_L01.bam	SRR445100	@dbgap@:reads/SRP012000/SRS118054/SRX129637/SRR445100/SRR445100.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCCS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsRecurrent.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsRecurrent.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsRecurrent.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-03D	DNA	EFO	SRS270759	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E07	SRX122699		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-04A-03D GS00790-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36066-FS3_L01.bam	SRR415109	@dbgap@:reads/SRP012000/SRS270759/SRX122699/SRR415109/SRR415109.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCCS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsPrimary.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsPrimary.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsPrimary.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01D	DNA	EFO	SRS270760	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_F07	SRX122700		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-09A-01D GS00790-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36067-FS3_L01.bam	SRR415101	@dbgap@:reads/SRP012000/SRS270760/SRX122700/SRR415101/SRR415101.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCCS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsPrimary.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCCS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsRecurrent.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsPrimary.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsRecurrent.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsPrimary.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCCS_NormalVsRecurrent.png	4			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_B05	SRX122698		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCCS-14A-01D GS00792-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36068-FS3_L01.bam	SRR415117	@dbgap@:reads/SRP012000/SRS270761/SRX122698/SRR415117/SRR415117.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCFW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCFW_NormalVsPrimary.png	4			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCFW_NormalVsPrimary.png	4			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCFW_NormalVsPrimary.png	4			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H02	SRX362909		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-09A-01D GS01241-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60527-FS3_L01.bam	SRR1006674	@dbgap@:reads/SRP012000/SRS489662/SRX362909/SRR1006674/SRR1006674.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCFW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCFW_NormalVsPrimary.png	4			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCFW_NormalVsPrimary.png	4			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCFW_NormalVsPrimary.png	4			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCFW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCFW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A03	SRX362908		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCFW-14A-01D GS01241-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L01.bam	SRR1006681	@dbgap@:reads/SRP012000/SRS489661/SRX362908/SRR1006681/SRR1006681.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCGR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsPrimary.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsPrimary.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsPrimary.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-01D	DNA	EFO	SRS301119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F03	SRX202422		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-03A-01D GS01087-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52997-FS3_L01.bam	SRR610648	@dbgap@:reads/SRP012000/SRS301119/SRX202422/SRR610648/SRR610648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCGR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsRecurrent.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsRecurrent.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsRecurrent.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-02D	DNA	EFO	SRS373870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H11	SRX202421		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-04A-02D GS01087-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52996-FS3_L01.bam	SRR610656	@dbgap@:reads/SRP012000/SRS373870/SRX202421/SRR610656/SRR610656.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCGR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsPrimary.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCGR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsRecurrent.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsPrimary.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsRecurrent.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsPrimary.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCGR_NormalVsRecurrent.png	4			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCGR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCGR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_F11	SRX202420		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCGR-14A-02D GS01087-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53632-FS3_L01.bam	SRR610664	@dbgap@:reads/SRP012000/SRS373869/SRX202420/SRR610664/SRR610664.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCRZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsPrimary.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsPrimary.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsPrimary.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-01D	DNA	EFO	SRS301122	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_G02	SRX202414		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-03A-01D GS01087-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53030-FS3_L01.bam	SRR610601	@dbgap@:reads/SRP012000/SRS301122/SRX202414/SRR610601/SRR610601.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCRZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsRecurrent.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsRecurrent.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsRecurrent.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-02D	DNA	EFO	SRS301123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H02	SRX202415		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-04A-02D GS01087-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52069-FS3_L01.bam	SRR610593	@dbgap@:reads/SRP012000/SRS301123/SRX202415/SRR610593/SRR610593.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCRZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsPrimary.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASCRZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsRecurrent.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsPrimary.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsRecurrent.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsPrimary.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASCRZ_NormalVsRecurrent.png	4			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASCRZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASCRZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-02D	DNA	EFO	SRS373866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C11	SRX202413		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASCRZ-14A-02D GS01087-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53634-FS3_L01.bam	SRR610609	@dbgap@:reads/SRP012000/SRS373866/SRX202413/SRR610609/SRR610609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASFEW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsRecurrent.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsRecurrent.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsRecurrent.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G03	SRX172321		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-04A-02D GS01044-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48932-FS3_L01.bam	SRR529913	@dbgap@:reads/SRP012000/SRS301125/SRX172321/SRR529913/SRR529913.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASFEW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsPrimary.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsPrimary.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsPrimary.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-02D	DNA	EFO	SRS301126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E03	SRX172320		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-09A-02D GS01044-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48933-FS3_L01.bam	SRR529920	@dbgap@:reads/SRP012000/SRS301126/SRX172320/SRR529920/SRR529920.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASFEW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsPrimary.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASFEW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsRecurrent.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsPrimary.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsRecurrent.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsPrimary.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFEW_NormalVsRecurrent.png	4			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFEW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFEW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F03	SRX172319		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFEW-14A-01D GS01044-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48934-FS3_L01.bam	SRR529927	@dbgap@:reads/SRP012000/SRS160318/SRX172319/SRR529927/SRR529927.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASFJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFJB_NormalVsPrimary.png	4			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFJB_NormalVsPrimary.png	4			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFJB_NormalVsPrimary.png	4			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-04D	DNA	EFO	SRS494308	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C02	SRX368265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-09A-04D GS02040-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66981-FS3_L01.bam	SRR1017534	@dbgap@:reads/SRP012000/SRS494308/SRX368265/SRR1017534/SRR1017534.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASFJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFJB_NormalVsPrimary.png	4			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFJB_NormalVsPrimary.png	4			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFJB_NormalVsPrimary.png	4			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-02D	DNA	EFO	SRS494307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D04	SRX368264		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFJB-14A-02D GS02040-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66979-FS3_L01.bam	SRR1017541	@dbgap@:reads/SRP012000/SRS494307/SRX368264/SRR1017541/SRR1017541.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASFLM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsRecurrent.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsRecurrent.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsRecurrent.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B08	SRX171546		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-04A-01D GS01044-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L03.bam	SRR528946	@dbgap@:reads/SRP012000/SRS301127/SRX171546/SRR528946/SRR528946.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASFLM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsPrimary.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsPrimary.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsPrimary.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01D	DNA	EFO	SRS301128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H07	SRX171545		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-09A-01D GS01044-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49255-FS3_L01.bam	SRR528953	@dbgap@:reads/SRP012000/SRS301128/SRX171545/SRR528953/SRR528953.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASFLM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsPrimary.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASFLM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsRecurrent.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsPrimary.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsRecurrent.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsPrimary.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASFLM_NormalVsRecurrent.png	4			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASFLM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASFLM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A08	SRX171544		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASFLM-14A-01D GS01044-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49254-FS3_L01.bam	SRR528960	@dbgap@:reads/SRP012000/SRS301129/SRX171544/SRR528960/SRR528960.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGCE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsPrimary.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsPrimary.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsPrimary.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-01D	DNA	EFO	SRS301130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_A02	SRX206474		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-09A-01D GS01114-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56073-FS3_L01.bam	SRR620269	@dbgap@:reads/SRP012000/SRS301130/SRX206474/SRR620269/SRR620269.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGCE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsPrimary.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGCE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsRecurrent.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsPrimary.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsRecurrent.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsPrimary.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsRecurrent.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_B02	SRX206473		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-14A-01D GS01114-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56074-FS3_L01.bam	SRR620276	@dbgap@:reads/SRP012000/SRS301131/SRX206473/SRR620276/SRR620276.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGCE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsRecurrent.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsRecurrent.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGCE_NormalVsRecurrent.png	4			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGCE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGCE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01114-CLS_D02	SRX206475		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGCE-40A-01D GS01114-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56072-FS3_L01.bam	SRR620262	@dbgap@:reads/SRP012000/SRS301132/SRX206475/SRR620262/SRR620262.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGGK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGGK_NormalVsPrimary.png	4			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGGK_NormalVsPrimary.png	4			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGGK_NormalVsPrimary.png	4			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-03D	DNA	EFO	SRS489664	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B03	SRX362911		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-09A-03D GS01241-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60528-FS3_L01.bam	SRR1006688	@dbgap@:reads/SRP012000/SRS489664/SRX362911/SRR1006688/SRR1006688.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGGK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGGK_NormalVsPrimary.png	4			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGGK_NormalVsPrimary.png	4			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGGK_NormalVsPrimary.png	4			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-01D	DNA	EFO	SRS489663	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C03	SRX362910		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGGK-14A-01D GS01241-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60537-FS3_L03.bam	SRR1006695	@dbgap@:reads/SRP012000/SRS489663/SRX362910/SRR1006695/SRR1006695.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGMZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsRecurrent.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsRecurrent.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsRecurrent.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-04A-02D	DNA	EFO	SRS270762	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_C02	SRX202095		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-04A-02D GS01087-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53190-FS3_L01.bam	SRR610081	@dbgap@:reads/SRP012000/SRS270762/SRX202095/SRR610081/SRR610081.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGMZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsPrimary.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsPrimary.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsPrimary.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01D	DNA	EFO	SRS270763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B02	SRX202094		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-09A-01D GS01087-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS53189-FS3_L01.bam	SRR610089	@dbgap@:reads/SRP012000/SRS270763/SRX202094/SRR610089/SRR610089.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGMZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsPrimary.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGMZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsRecurrent.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsPrimary.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsRecurrent.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsPrimary.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGMZ_NormalVsRecurrent.png	4			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGMZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGMZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-14A-02D	DNA	EFO	SRS373597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A11	SRX202093		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGMZ-14A-02D GS01087-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52789-FS3_L01.bam	SRR610097	@dbgap@:reads/SRP012000/SRS373597/SRX202093/SRR610097/SRR610097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGWH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsRecurrent.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsRecurrent.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsRecurrent.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C07	SRX144655		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-04A-02D GS00790-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37679-FS3_L01.bam	SRR491235	@dbgap@:reads/SRP012000/SRS270765/SRX144655/SRR491235/SRR491235.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGWH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsPrimary.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsPrimary.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsPrimary.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-03D	DNA	EFO	SRS270766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D08	SRX144654		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-09A-03D GS00943-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41628-FS3_L01.bam	SRR491243	@dbgap@:reads/SRP012000/SRS270766/SRX144654/SRR491243/SRR491243.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGWH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsPrimary.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASGWH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsRecurrent.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsPrimary.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsRecurrent.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsPrimary.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASGWH_NormalVsRecurrent.png	4			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASGWH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASGWH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-02D	DNA	EFO	SRS270767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G09	SRX144653		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASGWH-14A-02D GS00792-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37678-FS3_L01.bam	SRR491250	@dbgap@:reads/SRP012000/SRS270767/SRX144653/SRR491250/SRR491250.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASHBI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHBI_NormalVsPrimary.png	4			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHBI_NormalVsPrimary.png	4			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHBI_NormalVsPrimary.png	4			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D03	SRX362984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-09A-01D GS01241-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60464-FS3_L01.bam	SRR1007204	@dbgap@:reads/SRP012000/SRS489737/SRX362984/SRR1007204/SRR1007204.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASHBI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHBI_NormalVsPrimary.png	4			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHBI_NormalVsPrimary.png	4			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHBI_NormalVsPrimary.png	4			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHBI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHBI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F03	SRX362983		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHBI-14A-01D GS01241-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60529-FS3_L01.bam	SRR1007211	@dbgap@:reads/SRP012000/SRS489736/SRX362983/SRR1007211/SRR1007211.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASHHH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHHH_NormalVsPrimary.png	4			
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHHH_NormalVsPrimary.png	4			
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHHH_NormalVsPrimary.png	4			
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-09A-01D	DNA	EFO	SRS494312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D02	SRX368269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-09A-01D GS02040-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66984-FS3_L01.bam	SRR1017549	@dbgap@:reads/SRP012000/SRS494312/SRX368269/SRR1017549/SRR1017549.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASHHH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHHH_NormalVsPrimary.png	4			
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHHH_NormalVsPrimary.png	4			
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHHH_NormalVsPrimary.png	4			
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHHH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHHH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASHHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHHH-14A-02D	DNA	EFO	SRS494311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E04	SRX368268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHHH-14A-02D GS02040-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66983-FS3_L01.bam	SRR1017556	@dbgap@:reads/SRP012000/SRS494311/SRX368268/SRR1017556/SRR1017556.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASHLE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHLE_NormalVsPrimary.png	4			
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHLE_NormalVsPrimary.png	4			
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHLE_NormalVsPrimary.png	4			
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-03A-02D	DNA	EFO	SRS489884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_A04	SRX363156		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-03A-02D GS01969-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62131-FS3_L01.bam	SRR1008405	@dbgap@:reads/SRP012000/SRS489884/SRX363156/SRR1008405/SRR1008405.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASHLE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHLE_NormalVsPrimary.png	4			
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHLE_NormalVsPrimary.png	4			
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHLE_NormalVsPrimary.png	4			
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHLE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHLE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHLE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHLE-14A-02D	DNA	EFO	SRS489883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_B04	SRX363155		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHLE-14A-02D GS01969-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62321-FS3_L01.bam	SRR1008413	@dbgap@:reads/SRP012000/SRS489883/SRX363155/SRR1008413/SRR1008413.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASHYZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsRecurrent.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsRecurrent.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsRecurrent.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_D05	SRX120941		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-04A-03D GS00790-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36049-FS3_L01.bam	SRR410822	@dbgap@:reads/SRP012000/SRS270771/SRX120941/SRR410822/SRR410822.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASHYZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsPrimary.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsPrimary.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsPrimary.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03D	DNA	EFO	SRS270772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_A09	SRX120940		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-09A-03D GS00792-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35635-FS3_L01.bam	SRR410830	@dbgap@:reads/SRP012000/SRS270772/SRX120940/SRR410830/SRR410830.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASHYZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsPrimary.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASHYZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsRecurrent.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsPrimary.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsRecurrent.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsPrimary.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASHYZ_NormalVsRecurrent.png	4			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASHYZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASHYZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-03D	DNA	EFO	SRS270773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E10	SRX120939		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASHYZ-14A-03D GS00790-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36064-FS3_L01.bam	SRR410838	@dbgap@:reads/SRP012000/SRS270773/SRX120939/SRR410838/SRR410838.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASIBG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIBG_NormalVsPrimary.png	4			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIBG_NormalVsPrimary.png	4			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIBG_NormalVsPrimary.png	4			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01D	DNA	EFO	SRS118055	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_B09	SRX120490		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-09A-01D GS00662-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18404-FS3_L01.bam	SRR409203	@dbgap@:reads/SRP012000/SRS118055/SRX120490/SRR409203/SRR409203.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASIBG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIBG_NormalVsPrimary.png	4			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIBG_NormalVsPrimary.png	4			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIBG_NormalVsPrimary.png	4			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIBG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIBG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-14A-01D	DNA	EFO	SRS118056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00662-CLS_F09	SRX120489		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIBG-14A-01D GS00662-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18180-FS3_L01.bam	SRR409211	@dbgap@:reads/SRP012000/SRS118056/SRX120489/SRR409211/SRR409211.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASIEJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsRecurrent.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsRecurrent.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsRecurrent.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-04A-01D	DNA	EFO	SRS270774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_B08	SRX122212		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-04A-01D GS00790-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37164-FS3_L01.bam	SRR413839	@dbgap@:reads/SRP012000/SRS270774/SRX122212/SRR413839/SRR413839.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASIEJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsPrimary.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsPrimary.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsPrimary.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F10	SRX122213		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-09A-02D GS00792-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36986-FS3_L01.bam	SRR413831	@dbgap@:reads/SRP012000/SRS270775/SRX122213/SRR413831/SRR413831.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASIEJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsPrimary.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASIEJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsRecurrent.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsPrimary.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsRecurrent.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsPrimary.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEJ_NormalVsRecurrent.png	4			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-02D	DNA	EFO	SRS270776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_C08	SRX122211		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEJ-14A-02D GS00790-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36780-FS3_L01.bam	SRR413847	@dbgap@:reads/SRP012000/SRS270776/SRX122211/SRR413847/SRR413847.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASIEP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEP_NormalVsPrimary.png	4			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEP_NormalVsPrimary.png	4			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEP_NormalVsPrimary.png	4			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-05D	DNA	EFO	SRS489741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G03	SRX362990		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-09A-05D GS01241-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58469-FS3_L01.bam	SRR1007247	@dbgap@:reads/SRP012000/SRS489741/SRX362990/SRR1007247/SRR1007247.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASIEP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEP_NormalVsPrimary.png	4			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEP_NormalVsPrimary.png	4			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASIEP_NormalVsPrimary.png	4			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASIEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASIEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H03	SRX362989		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASIEP-14A-01D GS01241-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60466-FS3_L01.bam	SRR1007254	@dbgap@:reads/SRP012000/SRS489740/SRX362989/SRR1007254/SRR1007254.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASINN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsRecurrent.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsRecurrent.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsRecurrent.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02D	DNA	EFO	SRS301133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-04A-02D GS01087-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_H03	SRX191100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-04A-02D GS01087-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52811-FS3_L01.bam	SRR579396	@dbgap@:reads/SRP012000/SRS301133/SRX191100/SRR579396/SRR579396.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASINN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsPrimary.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsPrimary.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsPrimary.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-01D	DNA	EFO	SRS301134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-09A-01D GS01087-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_D12	SRX191101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-09A-01D GS01087-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52934-FS3_L01.bam	SRR579388	@dbgap@:reads/SRP012000/SRS301134/SRX191101/SRR579388/SRR579388.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASINN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsPrimary.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASINN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsRecurrent.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsPrimary.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsRecurrent.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsPrimary.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASINN_NormalVsRecurrent.png	4			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASINN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASINN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-01D	DNA	EFO	SRS301135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASINN-14A-01D GS01087-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_E12	SRX191099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASINN-14A-01D GS01087-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52810-FS3_L01.bam	SRR579404	@dbgap@:reads/SRP012000/SRS301135/SRX191099/SRR579404/SRR579404.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJGZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51481-FS3_L01.bam	SRR564195	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR564195/SRR564195.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJGZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-02D	DNA	EFO	SRS301136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_F02	SRX185426		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-04A-02D GS01068-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59603-FS3_L01.bam	SRR1006562	@dbgap@:reads/SRP012000/SRS301136/SRX185426/SRR1006562/SRR1006562.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJGZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51475-FS3_L01.bam	SRR564188	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR564188/SRR564188.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJGZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-09A-02D	DNA	EFO	SRS301137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_D02	SRX185427		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-09A-02D GS01068-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59602-FS3_L01.bam	SRR1006554	@dbgap@:reads/SRP012000/SRS301137/SRX185427/SRR1006554/SRR1006554.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJGZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJGZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51159-FS3_L01.bam	SRR564202	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR564202/SRR564202.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJGZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJGZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsPrimary.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJGZ_NormalVsRecurrent.png	4			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJGZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJGZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-14A-01D	DNA	EFO	SRS301138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_E02	SRX185425		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJGZ-14A-01D GS01068-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59264-FS3_L01.bam	SRR1006570	@dbgap@:reads/SRP012000/SRS301138/SRX185425/SRR1006570/SRR1006570.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJIM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsRecurrent.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsRecurrent.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsRecurrent.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-04A-01D	DNA	EFO	SRS301139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_B03	SRX204986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-04A-01D GS01087-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54118-FS3_L01.bam	SRR618038	@dbgap@:reads/SRP012000/SRS301139/SRX204986/SRR618038/SRR618038.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJIM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsPrimary.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsPrimary.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsPrimary.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-02D	DNA	EFO	SRS301140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01087-CLS_A03	SRX204985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-09A-02D GS01087-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54119-FS3_L01.bam	SRR618046	@dbgap@:reads/SRP012000/SRS301140/SRX204985/SRR618046/SRR618046.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJIM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsPrimary.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJIM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsRecurrent.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsPrimary.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsRecurrent.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsPrimary.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJIM_NormalVsRecurrent.png	4			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJIM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJIM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-10A-02D	DNA	EFO	SRS375910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01100-CLS_E12	SRX204984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJIM-10A-02D GS01100-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55031-FS3_L01.bam	SRR618054	@dbgap@:reads/SRP012000/SRS375910/SRX204984/SRR618054/SRR618054.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJTM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJTM_NormalVsPrimary.png	4			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJTM_NormalVsPrimary.png	4			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJTM_NormalVsPrimary.png	4			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01D	DNA	EFO	SRS489743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A04	SRX362992		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-09A-01D GS01241-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60538-FS3_L01.bam	SRR1007261	@dbgap@:reads/SRP012000/SRS489743/SRX362992/SRR1007261/SRR1007261.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASJTM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJTM_NormalVsPrimary.png	4			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJTM_NormalVsPrimary.png	4			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASJTM_NormalVsPrimary.png	4			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASJTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASJTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B04	SRX362991		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASJTM-14A-01D GS01241-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58468-FS3_L01.bam	SRR1007268	@dbgap@:reads/SRP012000/SRS489742/SRX362991/SRR1007268/SRR1007268.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASLSD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsPrimary.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsPrimary.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsPrimary.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01D	DNA	EFO	SRS270777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D06	SRX144652		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-03A-01D GS00747-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34798-FS3_L03.bam	SRR491213	@dbgap@:reads/SRP012000/SRS270777/SRX144652/SRR491213/SRR491213.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASLSD_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsRecurrent.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsRecurrent.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsRecurrent.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-02D	DNA	EFO	SRS270778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G05	SRX144651		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-04A-02D GS00943-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41440-FS3_L01.bam	SRR491220	@dbgap@:reads/SRP012000/SRS270778/SRX144651/SRR491220/SRR491220.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASLSD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsPrimary.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASLSD_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsRecurrent.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsPrimary.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsRecurrent.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsPrimary.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASLSD_NormalVsRecurrent.png	4			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASLSD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASLSD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-01D	DNA	EFO	SRS270779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F06	SRX144650		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASLSD-14A-01D GS00747-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34267-FS3_L01.bam	SRR491227	@dbgap@:reads/SRP012000/SRS270779/SRX144650/SRR491227/SRR491227.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMGW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsPrimary.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsPrimary.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsPrimary.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H03	SRX171627		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-09A-01D GS01044-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L01.bam	SRR529336	@dbgap@:reads/SRP012000/SRS301142/SRX171627/SRR529336/SRR529336.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMGW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsPrimary.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMGW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsRecurrent.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsPrimary.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsRecurrent.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsPrimary.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsRecurrent.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A04	SRX171626		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-14A-01D GS01044-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48931-FS3_L01.bam	SRR529343	@dbgap@:reads/SRP012000/SRS301143/SRX171626/SRR529343/SRR529343.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMGW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsRecurrent.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsRecurrent.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMGW_NormalVsRecurrent.png	4			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMGW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMGW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C04	SRX171628		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMGW-40A-01D GS01044-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48929-FS3_L04.bam	SRR529332	@dbgap@:reads/SRP012000/SRS301144/SRX171628/SRR529332/SRR529332.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMHY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsPrimary.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsPrimary.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsPrimary.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-01D	DNA	EFO	SRS270780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_E07	SRX122354		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-03A-01D GS00792-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36044-FS3_L01.bam	SRR414097	@dbgap@:reads/SRP012000/SRS270780/SRX122354/SRR414097/SRR414097.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMHY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsRecurrent.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsRecurrent.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsRecurrent.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_D10	SRX122353		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-04A-02D GS00792-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36043-FS3_L01.bam	SRR414105	@dbgap@:reads/SRP012000/SRS270781/SRX122353/SRR414105/SRR414105.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMHY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsPrimary.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMHY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsRecurrent.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsPrimary.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsRecurrent.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsPrimary.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMHY_NormalVsRecurrent.png	4			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMHY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMHY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-10A-01D	DNA	EFO	SRS270782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F06	SRX122352		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMHY-10A-01D GS00792-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36045-FS3_L01.bam	SRR414113	@dbgap@:reads/SRP012000/SRS270782/SRX122352/SRR414113/SRR414113.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMYS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E07	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00943-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMYS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_B10	SRX148711		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-04A-02D GS00747-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43041-FS3_L03.bam	SRR498641	@dbgap@:reads/SRP012000/SRS270784/SRX148711/SRR498641/SRR498641.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMYS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H09	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00747-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMYS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-02D	DNA	EFO	SRS287512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C07	SRX148710		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-09A-02D GS00943-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41634-FS3_L01.bam	SRR498648	@dbgap@:reads/SRP012000/SRS287512/SRX148710/SRR498648/SRR498648.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMYS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMYS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_A10	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00747-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMYS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASMYS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsPrimary.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASMYS_NormalVsRecurrent.png	4			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASMYS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASMYS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D07	SRX148709		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASMYS-14A-02D GS00943-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34099-FS3_L01.bam	SRR498655	@dbgap@:reads/SRP012000/SRS270785/SRX148709/SRR498655/SRR498655.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASPGA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPGA_NormalVsPrimary.png	4			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPGA_NormalVsPrimary.png	4			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPGA_NormalVsPrimary.png	4			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-05D	DNA	EFO	SRS489666	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C04	SRX362913		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-09A-05D GS01241-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58466-FS3_L01.bam	SRR1006702	@dbgap@:reads/SRP012000/SRS489666/SRX362913/SRR1006702/SRR1006702.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASPGA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPGA_NormalVsPrimary.png	4			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPGA_NormalVsPrimary.png	4			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPGA_NormalVsPrimary.png	4			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D04	SRX362912		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPGA-14A-01D GS01241-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS58467-FS3_L03.bam	SRR1006709	@dbgap@:reads/SRP012000/SRS489665/SRX362912/SRR1006709/SRR1006709.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASPKE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPKE_NormalVsPrimary.png	4			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPKE_NormalVsPrimary.png	4			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPKE_NormalVsPrimary.png	4			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-03D	DNA	EFO	SRS489708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E04	SRX362955		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-09A-03D GS01241-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60381-FS3_L01.bam	SRR1006999	@dbgap@:reads/SRP012000/SRS489708/SRX362955/SRR1006999/SRR1006999.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASPKE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPKE_NormalVsPrimary.png	4			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPKE_NormalVsPrimary.png	4			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPKE_NormalVsPrimary.png	4			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPKE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPKE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F04	SRX362954		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPKE-14A-01D GS01241-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60380-FS3_L01.bam	SRR1007005	@dbgap@:reads/SRP012000/SRS489707/SRX362954/SRR1007005/SRR1007005.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASPLU_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsRecurrent.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsRecurrent.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsRecurrent.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01D	DNA	EFO	SRS270786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_A07	SRX148457		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-04A-01D GS01004-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43984-FS3_L01.bam	SRR497845	@dbgap@:reads/SRP012000/SRS270786/SRX148457/SRR497845/SRR497845.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASPLU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsPrimary.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsPrimary.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsPrimary.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_G07	SRX148456		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-09A-02D GS00792-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38361-FS3_L01.bam	SRR497853	@dbgap@:reads/SRP012000/SRS270787/SRX148456/SRR497853/SRR497853.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASPLU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsPrimary.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASPLU_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsRecurrent.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsPrimary.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsRecurrent.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsPrimary.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPLU_NormalVsRecurrent.png	4			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPLU_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPLU_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G07	SRX148455		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPLU-14A-01D GS01004-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44412-FS3_L01.bam	SRR497861	@dbgap@:reads/SRP012000/SRS270788/SRX148455/SRR497861/SRR497861.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASPTM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPTM_NormalVsPrimary.png	4			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPTM_NormalVsPrimary.png	4			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPTM_NormalVsPrimary.png	4			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_H03	SRX176571		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-09A-01D GS01041-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46245-FS3_L01.bam	SRR538992	@dbgap@:reads/SRP012000/SRS301145/SRX176571/SRR538992/SRR538992.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASPTM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPTM_NormalVsPrimary.png	4			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPTM_NormalVsPrimary.png	4			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASPTM_NormalVsPrimary.png	4			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASPTM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASPTM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-02D	DNA	EFO	SRS301146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A04	SRX176570		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASPTM-14A-02D GS01041-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48765-FS3_L01.bam	SRR538999	@dbgap@:reads/SRP012000/SRS301146/SRX176570/SRR538999/SRR538999.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASRLS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASRLS_NormalVsPrimary.png	4			
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASRLS_NormalVsPrimary.png	4			
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASRLS_NormalVsPrimary.png	4			
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-01D	DNA	EFO	SRS489733	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G04	SRX362980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-09A-01D GS01241-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60383-FS3_L01.bam	SRR1007174	@dbgap@:reads/SRP012000/SRS489733/SRX362980/SRR1007174/SRR1007174.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASRLS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASRLS_NormalVsPrimary.png	4			
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASRLS_NormalVsPrimary.png	4			
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASRLS_NormalVsPrimary.png	4			
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASRLS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASRLS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-01D	DNA	EFO	SRS489732	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H04	SRX362979		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASRLS-14A-01D GS01241-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60382-FS3_L01.bam	SRR1007181	@dbgap@:reads/SRP012000/SRS489732/SRX362979/SRR1007181/SRR1007181.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASSSI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASSSI_NormalVsPrimary.png	4			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASSSI_NormalVsPrimary.png	4			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASSSI_NormalVsPrimary.png	4			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_A05	SRX362978		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-09A-01D GS01241-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60539-FS3_L01.bam	SRR1007160	@dbgap@:reads/SRP012000/SRS489731/SRX362978/SRR1007160/SRR1007160.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASSSI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASSSI_NormalVsPrimary.png	4			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASSSI_NormalVsPrimary.png	4			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASSSI_NormalVsPrimary.png	4			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASSSI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASSSI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_B05	SRX362977		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASSSI-14A-01D GS01241-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60437-FS3_L01.bam	SRR1007167	@dbgap@:reads/SRP012000/SRS489730/SRX362977/SRR1007167/SRR1007167.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASTTW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTTW_NormalVsPrimary.png	4			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTTW_NormalVsPrimary.png	4			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTTW_NormalVsPrimary.png	4			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01D	DNA	EFO	SRS494359	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E02	SRX368318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-09A-01D GS02040-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L01.bam	SRR1017627	@dbgap@:reads/SRP012000/SRS494359/SRX368318/SRR1017627/SRR1017627.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASTTW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTTW_NormalVsPrimary.png	4			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTTW_NormalVsPrimary.png	4			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTTW_NormalVsPrimary.png	4			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-14A-01D	DNA	EFO	SRS494358	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F04	SRX368317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTTW-14A-01D GS02040-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66996-FS3_L03.bam	SRR1017634	@dbgap@:reads/SRP012000/SRS494358/SRX368317/SRR1017634/SRR1017634.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASTUH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsPrimary.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsPrimary.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsPrimary.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_A02	SRX201673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-03A-01D GS01046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49257-FS3_L01.bam	SRR609384	@dbgap@:reads/SRP012000/SRS301147/SRX201673/SRR609384/SRR609384.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASTUH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsRecurrent.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsRecurrent.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsRecurrent.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01D	DNA	EFO	SRS373295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_C02	SRX201674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-04A-01D GS01046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49258-FS3_L01.bam	SRR609377	@dbgap@:reads/SRP012000/SRS373295/SRX201674/SRR609377/SRR609377.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASTUH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsPrimary.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASTUH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsRecurrent.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsPrimary.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsRecurrent.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsPrimary.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASTUH_NormalVsRecurrent.png	4			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASTUH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASTUH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01046-CLS_B02	SRX201672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASTUH-14A-01D GS01046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49104-FS3_L01.bam	SRR609391	@dbgap@:reads/SRP012000/SRS301148/SRX201672/SRR609391/SRR609391.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVVS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsRecurrent.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsRecurrent.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsRecurrent.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01D	DNA	EFO	SRS301149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F04	SRX171621		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-04A-01D GS01044-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46873-FS3_L01.bam	SRR529286	@dbgap@:reads/SRP012000/SRS301149/SRX171621/SRR529286/SRR529286.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVVS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsPrimary.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsPrimary.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsPrimary.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-01D	DNA	EFO	SRS301150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D04	SRX171620		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-09A-01D GS01044-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L03.bam	SRR529293	@dbgap@:reads/SRP012000/SRS301150/SRX171620/SRR529293/SRR529293.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVVS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsPrimary.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVVS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsRecurrent.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsPrimary.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsRecurrent.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsPrimary.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVVS_NormalVsRecurrent.png	4			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVVS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVVS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-01D	DNA	EFO	SRS301151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E04	SRX171619		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVVS-14A-01D GS01044-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46874-FS3_L01.bam	SRR529300	@dbgap@:reads/SRP012000/SRS301151/SRX171619/SRR529300/SRR529300.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVYA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsRecurrent.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsRecurrent.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsRecurrent.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-02D	DNA	EFO	SRS301152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A05	SRX171674		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-04A-02D GS01044-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49072-FS3_L03.bam	SRR529752	@dbgap@:reads/SRP012000/SRS301152/SRX171674/SRR529752/SRR529752.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVYA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsPrimary.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsPrimary.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsPrimary.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01D	DNA	EFO	SRS301153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G04	SRX171673		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-09A-01D GS01044-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49073-FS3_L01.bam	SRR529758	@dbgap@:reads/SRP012000/SRS301153/SRX171673/SRR529758/SRR529758.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVYA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsPrimary.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVYA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsRecurrent.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsPrimary.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsRecurrent.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsPrimary.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYA_NormalVsRecurrent.png	4			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-14A-01D	DNA	EFO	SRS301154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H04	SRX171672		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYA-14A-01D GS01044-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49074-FS3_L03.bam	SRR529766	@dbgap@:reads/SRP012000/SRS301154/SRX171672/SRR529766/SRR529766.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVYL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsRecurrent.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsRecurrent.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsRecurrent.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-04A-02D	DNA	EFO	SRS301155	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D05	SRX172318		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-04A-02D GS01044-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L01.bam	SRR529892	@dbgap@:reads/SRP012000/SRS301155/SRX172318/SRR529892/SRR529892.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVYL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsPrimary.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsPrimary.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsPrimary.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B05	SRX172317		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-09A-01D GS01044-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49070-FS3_L01.bam	SRR529899	@dbgap@:reads/SRP012000/SRS301156/SRX172317/SRR529899/SRR529899.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVYL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsPrimary.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASVYL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsRecurrent.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsPrimary.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsRecurrent.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsPrimary.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASVYL_NormalVsRecurrent.png	4			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASVYL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASVYL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-02D	DNA	EFO	SRS301157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C05	SRX172316		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASVYL-10A-02D GS01044-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49071-FS3_L01.bam	SRR529906	@dbgap@:reads/SRP012000/SRS301157/SRX172316/SRR529906/SRR529906.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWAJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsRecurrent.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsRecurrent.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsRecurrent.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E10	SRX144753		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-04A-01D GS00747-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36129-FS3_L01.bam	SRR491412	@dbgap@:reads/SRP012000/SRS270790/SRX144753/SRR491412/SRR491412.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWAJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsPrimary.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsPrimary.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsPrimary.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-02D	DNA	EFO	SRS287515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F07	SRX144752		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-09A-02D GS00943-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41633-FS3_L01.bam	SRR491420	@dbgap@:reads/SRP012000/SRS287515/SRX144752/SRR491420/SRR491420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWAJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsPrimary.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWAJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsRecurrent.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsPrimary.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsRecurrent.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsPrimary.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAJ_NormalVsRecurrent.png	4			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-02D	DNA	EFO	SRS270791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D10	SRX144751		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAJ-14A-02D GS00747-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36130-FS3_L01.bam	SRR491428	@dbgap@:reads/SRP012000/SRS270791/SRX144751/SRR491428/SRR491428.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWAT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsRecurrent.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsRecurrent.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsRecurrent.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-04A-01D	DNA	EFO	SRS489828	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_C03	SRX363092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-04A-01D GS01984-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65156-FS3_L01.bam	SRR1007958	@dbgap@:reads/SRP012000/SRS489828/SRX363092/SRR1007958/SRR1007958.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWAT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsPrimary.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsPrimary.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsPrimary.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01984-CLS_F02	SRX363091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-09A-01D GS01984-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65155-FS3_L01.bam	SRR1007965	@dbgap@:reads/SRP012000/SRS489827/SRX363091/SRR1007965/SRR1007965.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWAT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsPrimary.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWAT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsRecurrent.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsPrimary.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsRecurrent.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsPrimary.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWAT_NormalVsRecurrent.png	4			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWAT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWAT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-14A-03D	DNA	EFO	SRS489826	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02005-CLS_G12	SRX363090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWAT-14A-03D GS02005-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65644-FS3_L01.bam	SRR1007972	@dbgap@:reads/SRP012000/SRS489826/SRX363090/SRR1007972/SRR1007972.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWLN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsRecurrent.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsRecurrent.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsRecurrent.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-04A-02D	DNA	EFO	SRS301158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G05	SRX170575		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-04A-02D GS01044-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49066-FS3_L01.bam	SRR526170	@dbgap@:reads/SRP012000/SRS301158/SRX170575/SRR526170/SRR526170.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWLN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsPrimary.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsPrimary.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsPrimary.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E05	SRX170576		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-09A-01D GS01044-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49068-FS3_L01.bam	SRR526163	@dbgap@:reads/SRP012000/SRS301159/SRX170576/SRR526163/SRR526163.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWLN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsPrimary.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWLN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsRecurrent.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsPrimary.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsRecurrent.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsPrimary.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWLN_NormalVsRecurrent.png	4			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWLN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWLN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-14A-01D	DNA	EFO	SRS301160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F05	SRX170574		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWLN-14A-01D GS01044-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49069-FS3_L03.bam	SRR526178	@dbgap@:reads/SRP012000/SRS301160/SRX170574/SRR526178/SRR526178.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWPD_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsRecurrent.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsRecurrent.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsRecurrent.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-02D	DNA	EFO	SRS301161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_A03	SRX187146		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-04A-02D GS01068-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51705-FS3_L01.bam	SRR570842	@dbgap@:reads/SRP012000/SRS301161/SRX187146/SRR570842/SRR570842.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWPD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsPrimary.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsPrimary.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsPrimary.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-01D	DNA	EFO	SRS301162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_G02	SRX187145		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-09A-01D GS01068-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51668-FS3_L08.bam	SRR570849	@dbgap@:reads/SRP012000/SRS301162/SRX187145/SRR570849/SRR570849.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWPD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsPrimary.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWPD_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsRecurrent.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsPrimary.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsRecurrent.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsPrimary.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPD_NormalVsRecurrent.png	4			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPD_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPD_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-02D	DNA	EFO	SRS301163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01068-CLS_H02	SRX187144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPD-14A-02D GS01068-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51158-FS3_L01.bam	SRR570854	@dbgap@:reads/SRP012000/SRS301163/SRX187144/SRR570854/SRR570854.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWPT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPT_NormalVsPrimary.png	4			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPT_NormalVsPrimary.png	4			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPT_NormalVsPrimary.png	4			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01D	DNA	EFO	SRS489739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_C05	SRX362986		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-09A-01D GS01241-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L01.bam	SRR1007218	@dbgap@:reads/SRP012000/SRS489739/SRX362986/SRR1007218/SRR1007218.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASWPT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPT_NormalVsPrimary.png	4			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPT_NormalVsPrimary.png	4			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASWPT_NormalVsPrimary.png	4			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASWPT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASWPT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-14A-01D	DNA	EFO	SRS489738	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_D05	SRX362985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASWPT-14A-01D GS01241-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60384-FS3_L01.bam	SRR1007225	@dbgap@:reads/SRP012000/SRS489738/SRX362985/SRR1007225/SRR1007225.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASXNR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsRecurrent.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsRecurrent.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsRecurrent.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_G09	SRX122350		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-04A-01D GS00790-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35649-FS3_L01.bam	SRR414081	@dbgap@:reads/SRP012000/SRS270792/SRX122350/SRR414081/SRR414081.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASXNR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsPrimary.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsPrimary.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsPrimary.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-03D	DNA	EFO	SRS270793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00792-CLS_F01	SRX122351		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-09A-03D GS00792-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33835-FS3_L01.bam	SRR414073	@dbgap@:reads/SRP012000/SRS270793/SRX122351/SRR414073/SRR414073.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASXNR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsPrimary.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASXNR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsRecurrent.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsPrimary.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsRecurrent.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsPrimary.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXNR_NormalVsRecurrent.png	4			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXNR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXNR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00790-CLS_E09	SRX122349		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXNR-14A-01D GS00790-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36060-FS3_L01.bam	SRR414089	@dbgap@:reads/SRP012000/SRS270794/SRX122349/SRR414089/SRR414089.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASXYG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXYG_NormalVsPrimary.png	4			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXYG_NormalVsPrimary.png	4			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXYG_NormalVsPrimary.png	4			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05D	DNA	EFO	SRS489729	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_E05	SRX362976		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-09A-05D GS01241-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60444-FS3_L01.bam	SRR1007146	@dbgap@:reads/SRP012000/SRS489729/SRX362976/SRR1007146/SRR1007146.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASXYG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXYG_NormalVsPrimary.png	4			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXYG_NormalVsPrimary.png	4			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASXYG_NormalVsPrimary.png	4			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASXYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASXYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_F05	SRX362975		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASXYG-14A-02D GS01241-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60443-FS3_L03.bam	SRR1007153	@dbgap@:reads/SRP012000/SRS489728/SRX362975/SRR1007153/SRR1007153.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASYJI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsRecurrent.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsRecurrent.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsRecurrent.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C06	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00943-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASYJI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsRecurrent.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsRecurrent.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsRecurrent.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F08	SRX148661		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-04A-01D GS00747-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57667-FS3_L02.bam	SRR675668	@dbgap@:reads/SRP012000/SRS270796/SRX148661/SRR675668/SRR675668.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASYJI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsPrimary.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsPrimary.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsPrimary.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D08	SRX148660		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-09A-03D GS00747-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57669-FS3_L01.bam	SRR675677	@dbgap@:reads/SRP012000/SRS287516/SRX148660/SRR675677/SRR675677.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASYJI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsPrimary.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASYJI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsRecurrent.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsPrimary.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsRecurrent.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsPrimary.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASYJI_NormalVsRecurrent.png	4			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASYJI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASYJI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-02D	DNA	EFO	SRS270797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E08	SRX148659		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASYJI-14A-02D GS00747-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57668-FS3_L01.bam	SRR675684	@dbgap@:reads/SRP012000/SRS270797/SRX148659/SRR675684/SRR675684.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASZLJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZLJ_NormalVsPrimary.png	4			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZLJ_NormalVsPrimary.png	4			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZLJ_NormalVsPrimary.png	4			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_A09	SRX122340		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-09A-01D GS00744-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS34468-FS3_L01.bam	SRR413993	@dbgap@:reads/SRP012000/SRS287517/SRX122340/SRR413993/SRR413993.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASZLJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZLJ_NormalVsPrimary.png	4			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZLJ_NormalVsPrimary.png	4			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZLJ_NormalVsPrimary.png	4			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZLJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZLJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-10A-01D	DNA	EFO	SRS270799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G10	SRX122339		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZLJ-10A-01D GS00747-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36131-FS3_L01.bam	SRR414001	@dbgap@:reads/SRP012000/SRS270799/SRX122339/SRR414001/SRR414001.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASZZE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsRecurrent.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsRecurrent.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsRecurrent.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E06	SRX147841		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-04A-01D GS00943-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41436-FS3_L01.bam	SRR496661	@dbgap@:reads/SRP012000/SRS270801/SRX147841/SRR496661/SRR496661.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASZZE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsPrimary.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsPrimary.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsPrimary.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-01D	DNA	EFO	SRS287518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D06	SRX147840		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-09A-01D GS00943-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41435-FS3_L01.bam	SRR496668	@dbgap@:reads/SRP012000/SRS287518/SRX147840/SRR496668/SRR496668.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASZZE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsPrimary.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PASZZE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsRecurrent.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsPrimary.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsRecurrent.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsPrimary.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PASZZE_NormalVsRecurrent.png	4			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PASZZE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PASZZE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-10A-01D	DNA	EFO	SRS332254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H08	SRX147839		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PASZZE-10A-01D GS00747-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36124-FS3_L01.bam	SRR496675	@dbgap@:reads/SRP012000/SRS332254/SRX147839/SRR496675/SRR496675.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATAST_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsRecurrent.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsRecurrent.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsRecurrent.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-01D	DNA	EFO	SRS270804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-04A-01D GS00747-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_E11	SRX122368		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-04A-01D GS00747-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36133-FS3_L01.bam	SRR414225	@dbgap@:reads/SRP012000/SRS270804/SRX122368/SRR414225/SRR414225.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATAST_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsPrimary.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsPrimary.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsPrimary.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01D	DNA	EFO	SRS287520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-09A-01D GS00747-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_H10	SRX122369		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-09A-01D GS00747-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36132-FS3_L01.bam	SRR414217	@dbgap@:reads/SRP012000/SRS287520/SRX122369/SRR414217/SRR414217.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATAST_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsPrimary.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATAST_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsRecurrent.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsPrimary.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsRecurrent.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsPrimary.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATAST_NormalVsRecurrent.png	4			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATAST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATAST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-10A-01D	DNA	EFO	SRS270805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATAST-10A-01D GS00747-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_D11	SRX122367		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATAST-10A-01D GS00747-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36153-FS3_L01.bam	SRR414233	@dbgap@:reads/SRP012000/SRS270805/SRX122367/SRR414233/SRR414233.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATDHA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsRecurrent.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsRecurrent.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsRecurrent.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-04A-01D	DNA	EFO	SRS301164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_B06	SRX171676		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-04A-01D GS01044-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46989-FS3_L01.bam	SRR529779	@dbgap@:reads/SRP012000/SRS301164/SRX171676/SRR529779/SRR529779.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATDHA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsPrimary.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsPrimary.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsPrimary.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01D	DNA	EFO	SRS301165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H05	SRX171677		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-09A-01D GS01044-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49064-FS3_L01.bam	SRR529772	@dbgap@:reads/SRP012000/SRS301165/SRX171677/SRR529772/SRR529772.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATDHA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsPrimary.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATDHA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsRecurrent.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsPrimary.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsRecurrent.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsPrimary.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDHA_NormalVsRecurrent.png	4			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDHA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDHA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-14A-01D	DNA	EFO	SRS301166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_A06	SRX171675		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDHA-14A-01D GS01044-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49065-FS3_L03.bam	SRR529787	@dbgap@:reads/SRP012000/SRS301166/SRX171675/SRR529787/SRR529787.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATDNN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsRecurrent.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsRecurrent.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsRecurrent.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00744-CLS_B09	SRX121877		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-04A-01D GS00744-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS35070-FS3_L01.bam	SRR413473	@dbgap@:reads/SRP012000/SRS270807/SRX121877/SRR413473/SRR413473.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATDNN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsPrimary.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsPrimary.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsPrimary.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_F11	SRX121876		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-09A-01D GS00747-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36155-FS3_L01.bam	SRR413481	@dbgap@:reads/SRP012000/SRS287521/SRX121876/SRR413481/SRR413481.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATDNN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsPrimary.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATDNN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsRecurrent.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsPrimary.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsRecurrent.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsPrimary.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATDNN_NormalVsRecurrent.png	4			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATDNN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATDNN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00747-CLS_G11	SRX121875		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATDNN-10A-01D GS00747-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36154-FS3_L01.bam	SRR413489	@dbgap@:reads/SRP012000/SRS270808/SRX121875/SRR413489/SRR413489.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATELT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATELT_NormalVsPrimary.png	4			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATELT_NormalVsPrimary.png	4			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATELT_NormalVsPrimary.png	4			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-02D	DNA	EFO	SRS489726	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-03A-02D GS01241-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_G05	SRX362974		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-03A-02D GS01241-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60441-FS3_L01.bam	SRR1007132	@dbgap@:reads/SRP012000/SRS489726/SRX362974/SRR1007132/SRR1007132.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATELT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATELT_NormalVsPrimary.png	4			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATELT_NormalVsPrimary.png	4			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATELT_NormalVsPrimary.png	4			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATELT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATELT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-14A-01D	DNA	EFO	SRS489727	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATELT-14A-01D GS01241-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01241-CLS_H05	SRX362973		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATELT-14A-01D GS01241-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS60442-FS3_L01.bam	SRR1007139	@dbgap@:reads/SRP012000/SRS489727/SRX362973/SRR1007139/SRR1007139.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATIAK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsRecurrent.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsRecurrent.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsRecurrent.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E06	SRX171679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-04A-02D GS01044-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48761-FS3_L03.bam	SRR529800	@dbgap@:reads/SRP012000/SRS301167/SRX171679/SRR529800/SRR529800.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATIAK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsPrimary.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsPrimary.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsPrimary.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01D	DNA	EFO	SRS301168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C06	SRX171680		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-09A-01D GS01044-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48630-FS3_L03.bam	SRR529794	@dbgap@:reads/SRP012000/SRS301168/SRX171680/SRR529794/SRR529794.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATIAK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsPrimary.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATIAK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsRecurrent.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsPrimary.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsRecurrent.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsPrimary.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATIAK_NormalVsRecurrent.png	4			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATIAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATIAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-01D	DNA	EFO	SRS301169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D06	SRX171678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATIAK-14A-01D GS01044-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46988-FS3_L01.bam	SRR529807	@dbgap@:reads/SRP012000/SRS301169/SRX171678/SRR529807/SRR529807.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATJHJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsPrimary.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsPrimary.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsPrimary.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01D	DNA	EFO	SRS301170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F06	SRX171683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-09A-01D GS01044-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48759-FS3_L03.bam	SRR529815	@dbgap@:reads/SRP012000/SRS301170/SRX171683/SRR529815/SRR529815.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATJHJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsPrimary.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATJHJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsRecurrent.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsPrimary.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsRecurrent.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsPrimary.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsRecurrent.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-14A-01D	DNA	EFO	SRS301171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_G06	SRX171681		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-14A-01D GS01044-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48760-FS3_L01.bam	SRR529828	@dbgap@:reads/SRP012000/SRS301171/SRX171681/SRR529828/SRR529828.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATJHJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsRecurrent.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsRecurrent.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATJHJ_NormalVsRecurrent.png	4			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATJHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATJHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-02D	DNA	EFO	SRS301172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_H06	SRX171682		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATJHJ-40A-02D GS01044-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48758-FS3_L01.bam	SRR529821	@dbgap@:reads/SRP012000/SRS301172/SRX171682/SRR529821/SRR529821.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Relapse_20160615.maf.txt	3						
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATKJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATKJB_NormalVsPrimary.png	4			
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATKJB_NormalVsPrimary.png	4			
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATKJB_NormalVsPrimary.png	4			
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-09A-04D	DNA	EFO	SRS489881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_C04	SRX363152		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-09A-04D GS01969-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62381-FS3_L01.bam	SRR1008376	@dbgap@:reads/SRP012000/SRS489881/SRX363152/SRR1008376/SRR1008376.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-20-PATKJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATKJB_NormalVsPrimary.png	4			
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_AML_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATKJB_NormalVsPrimary.png	4			
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-20-PATKJB_NormalVsPrimary.png	4			
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-20-PATKJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-20-PATKJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_AML_May_14_2014.tsv	3
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_AML_WGS_CNVLOH.tsv	3						
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_AML_WGS_SV.tsv	3						
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_AML_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-20-PATKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATKJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKJB-14A-02D	DNA	EFO	SRS489879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01969-CLS_E03	SRX363151		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-20-PATKJB-14A-02D GS01969-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62236-FS3_L01.bam	SRR1008384	@dbgap@:reads/SRP012000/SRS489879/SRX363151/SRR1008384/SRR1008384.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	stjude.org.AML.diagnosis.WGS.CGI.somatic.20180213.maf.txt	3						
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03D	DNA	EFO	SRS556998	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03D A20150 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20150	SRX469766		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PAMXZY-09A-03D A20150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20150_7_lanes_dupsFlagged.bam	SRR1168029	@dbgap@:reads/SRP012000/SRS556998/SRX469766/SRR1168029/SRR1168029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PAMXZY-09A-03D.fusion.vcf	3						
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03D	DNA	EFO	SRS556998	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03D A20150 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20150	SRX469766		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PAMXZY-09A-03D A20150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20150_7_lanes_dupsFlagged.bam	SRR1168029	@dbgap@:reads/SRP012000/SRS556998/SRX469766/SRR1168029/SRR1168029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PAMXZY-09A-03D.indel.vcf	3						
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03D	DNA	EFO	SRS556998	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03D A20150 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20150	SRX469766		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PAMXZY-09A-03D A20150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20150_7_lanes_dupsFlagged.bam	SRR1168029	@dbgap@:reads/SRP012000/SRS556998/SRX469766/SRR1168029/SRR1168029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PAMXZY-09A-03D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PAMXZY-09A-03D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03D	DNA	EFO	SRS556998	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03D A20150 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20150	SRX469766		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PAMXZY-09A-03D A20150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20150_7_lanes_dupsFlagged.bam	SRR1168029	@dbgap@:reads/SRP012000/SRS556998/SRX469766/SRR1168029/SRR1168029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMXZY-09A-03D_TARGET-21-PAMXZY-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMXZY-09A-03D_TARGET-21-PAMXZY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03D	DNA	EFO	SRS556998	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03D A20150 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20150	SRX469766		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PAMXZY-09A-03D A20150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20150_7_lanes_dupsFlagged.bam	SRR1168029	@dbgap@:reads/SRP012000/SRS556998/SRX469766/SRR1168029/SRR1168029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMXZY-09A-03D_TARGET-21-PAMXZY-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMXZY-09A-03D_TARGET-21-PAMXZY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-15A-01D	DNA	EFO	SRS557025	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-15A-01D A20186 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20186	SRX469793		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PAMXZY-15A-01D A20186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20186_4_lanes_dupsFlagged.bam	SRR1168025	@dbgap@:reads/SRP012000/SRS557025/SRX469793/SRR1168025/SRR1168025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PAMXZY-15A-01D.fusion.vcf	3						
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-15A-01D	DNA	EFO	SRS557025	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-15A-01D A20186 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20186	SRX469793		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PAMXZY-15A-01D A20186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20186_4_lanes_dupsFlagged.bam	SRR1168025	@dbgap@:reads/SRP012000/SRS557025/SRX469793/SRR1168025/SRR1168025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PAMXZY-15A-01D.indel.vcf	3						
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-15A-01D	DNA	EFO	SRS557025	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-15A-01D A20186 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20186	SRX469793		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PAMXZY-15A-01D A20186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20186_4_lanes_dupsFlagged.bam	SRR1168025	@dbgap@:reads/SRP012000/SRS557025/SRX469793/SRR1168025/SRR1168025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PAMXZY-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PAMXZY-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-15A-01D	DNA	EFO	SRS557025	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-15A-01D A20186 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20186	SRX469793		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PAMXZY-15A-01D A20186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20186_4_lanes_dupsFlagged.bam	SRR1168025	@dbgap@:reads/SRP012000/SRS557025/SRX469793/SRR1168025/SRR1168025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMXZY-09A-03D_TARGET-21-PAMXZY-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMXZY-09A-03D_TARGET-21-PAMXZY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-15A-01D	DNA	EFO	SRS557025	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-15A-01D A20186 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20186	SRX469793		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PAMXZY-15A-01D A20186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20186_4_lanes_dupsFlagged.bam	SRR1168025	@dbgap@:reads/SRP012000/SRS557025/SRX469793/SRR1168025/SRR1168025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMXZY-09A-03D_TARGET-21-PAMXZY-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMXZY-09A-03D_TARGET-21-PAMXZY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02D	DNA	EFO	SRS556968	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02D A20151 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20151	SRX469736		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PAMYMA-09A-02D A20151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20151_3_lanes_dupsFlagged.bam	SRR1168078	@dbgap@:reads/SRP012000/SRS556968/SRX469736/SRR1168078/SRR1168078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PAMYMA-09A-02D.fusion.vcf	3						
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02D	DNA	EFO	SRS556968	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02D A20151 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20151	SRX469736		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PAMYMA-09A-02D A20151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20151_3_lanes_dupsFlagged.bam	SRR1168078	@dbgap@:reads/SRP012000/SRS556968/SRX469736/SRR1168078/SRR1168078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PAMYMA-09A-02D.indel.vcf	3						
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02D	DNA	EFO	SRS556968	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02D A20151 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20151	SRX469736		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PAMYMA-09A-02D A20151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20151_3_lanes_dupsFlagged.bam	SRR1168078	@dbgap@:reads/SRP012000/SRS556968/SRX469736/SRR1168078/SRR1168078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PAMYMA-09A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PAMYMA-09A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02D	DNA	EFO	SRS556968	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02D A20151 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20151	SRX469736		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PAMYMA-09A-02D A20151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20151_3_lanes_dupsFlagged.bam	SRR1168078	@dbgap@:reads/SRP012000/SRS556968/SRX469736/SRR1168078/SRR1168078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02D	DNA	EFO	SRS556968	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02D A20151 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20151	SRX469736		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PAMYMA-09A-02D A20151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20151_3_lanes_dupsFlagged.bam	SRR1168078	@dbgap@:reads/SRP012000/SRS556968/SRX469736/SRR1168078/SRR1168078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PAMYMA-15A-01D.fusion.vcf	3						
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PAMYMA-15A-01D.indel.vcf	3						
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PAMYMA-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PAMYMA-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-09A-02D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-15A-01D	DNA	EFO	SRS556974	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-15A-01D A20187 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20187	SRX469742		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PAMYMA-15A-01D A20187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20187_3_lanes_dupsFlagged.bam	SRR1168035	@dbgap@:reads/SRP012000/SRS556974/SRX469742/SRR1168035/SRR1168035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01D	DNA	EFO	SRS557017	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01D A20199 library	PAIRED	GENOMIC	WGS	RANDOM	345	A20199	SRX469785		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PAMYMA-41A-01D A20199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20199_3_lanes_dupsFlagged.bam	SRR1168079	@dbgap@:reads/SRP012000/SRS557017/SRX469785/SRR1168079/SRR1168079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PAMYMA-41A-01D.fusion.vcf	3						
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01D	DNA	EFO	SRS557017	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01D A20199 library	PAIRED	GENOMIC	WGS	RANDOM	345	A20199	SRX469785		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PAMYMA-41A-01D A20199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20199_3_lanes_dupsFlagged.bam	SRR1168079	@dbgap@:reads/SRP012000/SRS557017/SRX469785/SRR1168079/SRR1168079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PAMYMA-41A-01D.indel.vcf	3						
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01D	DNA	EFO	SRS557017	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01D A20199 library	PAIRED	GENOMIC	WGS	RANDOM	345	A20199	SRX469785		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PAMYMA-41A-01D A20199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20199_3_lanes_dupsFlagged.bam	SRR1168079	@dbgap@:reads/SRP012000/SRS557017/SRX469785/SRR1168079/SRR1168079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PAMYMA-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PAMYMA-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01D	DNA	EFO	SRS557017	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01D A20199 library	PAIRED	GENOMIC	WGS	RANDOM	345	A20199	SRX469785		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PAMYMA-41A-01D A20199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20199_3_lanes_dupsFlagged.bam	SRR1168079	@dbgap@:reads/SRP012000/SRS557017/SRX469785/SRR1168079/SRR1168079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01D	DNA	EFO	SRS557017	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01D A20199 library	PAIRED	GENOMIC	WGS	RANDOM	345	A20199	SRX469785		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PAMYMA-41A-01D A20199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20199_3_lanes_dupsFlagged.bam	SRR1168079	@dbgap@:reads/SRP012000/SRS557017/SRX469785/SRR1168079/SRR1168079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PAMYMA-41A-01D_TARGET-21-PAMYMA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02D	DNA	EFO	SRS557039	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02D A20154 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20154	SRX469807		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PANVPB-09A-02D A20154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20154_3_lanes_dupsFlagged.bam	SRR1168076	@dbgap@:reads/SRP012000/SRS557039/SRX469807/SRR1168076/SRR1168076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PANVPB-09A-02D.fusion.vcf	3						
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02D	DNA	EFO	SRS557039	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02D A20154 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20154	SRX469807		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PANVPB-09A-02D A20154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20154_3_lanes_dupsFlagged.bam	SRR1168076	@dbgap@:reads/SRP012000/SRS557039/SRX469807/SRR1168076/SRR1168076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PANVPB-09A-02D.indel.vcf	3						
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02D	DNA	EFO	SRS557039	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02D A20154 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20154	SRX469807		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PANVPB-09A-02D A20154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20154_3_lanes_dupsFlagged.bam	SRR1168076	@dbgap@:reads/SRP012000/SRS557039/SRX469807/SRR1168076/SRR1168076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PANVPB-09A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PANVPB-09A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02D	DNA	EFO	SRS557039	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02D A20154 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20154	SRX469807		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PANVPB-09A-02D A20154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20154_3_lanes_dupsFlagged.bam	SRR1168076	@dbgap@:reads/SRP012000/SRS557039/SRX469807/SRR1168076/SRR1168076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANVPB-09A-02D_TARGET-21-PANVPB-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANVPB-09A-02D_TARGET-21-PANVPB-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02D	DNA	EFO	SRS557039	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02D A20154 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20154	SRX469807		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PANVPB-09A-02D A20154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20154_3_lanes_dupsFlagged.bam	SRR1168076	@dbgap@:reads/SRP012000/SRS557039/SRX469807/SRR1168076/SRR1168076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANVPB-09A-02D_TARGET-21-PANVPB-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANVPB-09A-02D_TARGET-21-PANVPB-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-15A-01D	DNA	EFO	SRS556958	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-15A-01D A20189 library	PAIRED	GENOMIC	WGS	RANDOM	270	A20189	SRX469726		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PANVPB-15A-01D A20189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20189_3_lanes_dupsFlagged.bam	SRR1168038	@dbgap@:reads/SRP012000/SRS556958/SRX469726/SRR1168038/SRR1168038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PANVPB-15A-01D.fusion.vcf	3						
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-15A-01D	DNA	EFO	SRS556958	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-15A-01D A20189 library	PAIRED	GENOMIC	WGS	RANDOM	270	A20189	SRX469726		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PANVPB-15A-01D A20189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20189_3_lanes_dupsFlagged.bam	SRR1168038	@dbgap@:reads/SRP012000/SRS556958/SRX469726/SRR1168038/SRR1168038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PANVPB-15A-01D.indel.vcf	3						
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-15A-01D	DNA	EFO	SRS556958	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-15A-01D A20189 library	PAIRED	GENOMIC	WGS	RANDOM	270	A20189	SRX469726		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PANVPB-15A-01D A20189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20189_3_lanes_dupsFlagged.bam	SRR1168038	@dbgap@:reads/SRP012000/SRS556958/SRX469726/SRR1168038/SRR1168038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PANVPB-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PANVPB-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-15A-01D	DNA	EFO	SRS556958	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-15A-01D A20189 library	PAIRED	GENOMIC	WGS	RANDOM	270	A20189	SRX469726		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PANVPB-15A-01D A20189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20189_3_lanes_dupsFlagged.bam	SRR1168038	@dbgap@:reads/SRP012000/SRS556958/SRX469726/SRR1168038/SRR1168038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANVPB-09A-02D_TARGET-21-PANVPB-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANVPB-09A-02D_TARGET-21-PANVPB-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-15A-01D	DNA	EFO	SRS556958	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-15A-01D A20189 library	PAIRED	GENOMIC	WGS	RANDOM	270	A20189	SRX469726		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PANVPB-15A-01D A20189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20189_3_lanes_dupsFlagged.bam	SRR1168038	@dbgap@:reads/SRP012000/SRS556958/SRX469726/SRR1168038/SRR1168038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANVPB-09A-02D_TARGET-21-PANVPB-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANVPB-09A-02D_TARGET-21-PANVPB-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03D	DNA	EFO	SRS556996	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03D A20152 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20152	SRX469764		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PANZLR-09A-03D A20152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20152_3_lanes_dupsFlagged.bam	SRR1168104	@dbgap@:reads/SRP012000/SRS556996/SRX469764/SRR1168104/SRR1168104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PANZLR-09A-03D.fusion.vcf	3						
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03D	DNA	EFO	SRS556996	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03D A20152 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20152	SRX469764		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PANZLR-09A-03D A20152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20152_3_lanes_dupsFlagged.bam	SRR1168104	@dbgap@:reads/SRP012000/SRS556996/SRX469764/SRR1168104/SRR1168104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PANZLR-09A-03D.indel.vcf	3						
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03D	DNA	EFO	SRS556996	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03D A20152 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20152	SRX469764		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PANZLR-09A-03D A20152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20152_3_lanes_dupsFlagged.bam	SRR1168104	@dbgap@:reads/SRP012000/SRS556996/SRX469764/SRR1168104/SRR1168104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PANZLR-09A-03D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PANZLR-09A-03D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03D	DNA	EFO	SRS556996	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03D A20152 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20152	SRX469764		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PANZLR-09A-03D A20152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20152_3_lanes_dupsFlagged.bam	SRR1168104	@dbgap@:reads/SRP012000/SRS556996/SRX469764/SRR1168104/SRR1168104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03D	DNA	EFO	SRS556996	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03D A20152 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20152	SRX469764		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PANZLR-09A-03D A20152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20152_3_lanes_dupsFlagged.bam	SRR1168104	@dbgap@:reads/SRP012000/SRS556996/SRX469764/SRR1168104/SRR1168104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PANZLR-15A-01D.fusion.vcf	3						
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PANZLR-15A-01D.indel.vcf	3						
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PANZLR-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PANZLR-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-09A-03D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-15A-01D	DNA	EFO	SRS557010	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-15A-01D A20188 library	PAIRED	GENOMIC	WGS	RANDOM	279	A20188	SRX469778		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PANZLR-15A-01D A20188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20188_4_lanes_dupsFlagged.bam	SRR1168091	@dbgap@:reads/SRP012000/SRS557010/SRX469778/SRR1168091/SRR1168091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02D	DNA	EFO	SRS557012	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02D A20153 library	PAIRED	GENOMIC	WGS	RANDOM	345	A20153	SRX469780		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PANZLR-41A-02D A20153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20153_5_lanes_dupsFlagged.bam	SRR1168068	@dbgap@:reads/SRP012000/SRS557012/SRX469780/SRR1168068/SRR1168068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PANZLR-41A-02D.fusion.vcf	3						
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02D	DNA	EFO	SRS557012	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02D A20153 library	PAIRED	GENOMIC	WGS	RANDOM	345	A20153	SRX469780		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PANZLR-41A-02D A20153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20153_5_lanes_dupsFlagged.bam	SRR1168068	@dbgap@:reads/SRP012000/SRS557012/SRX469780/SRR1168068/SRR1168068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PANZLR-41A-02D.indel.vcf	3						
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02D	DNA	EFO	SRS557012	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02D A20153 library	PAIRED	GENOMIC	WGS	RANDOM	345	A20153	SRX469780		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PANZLR-41A-02D A20153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20153_5_lanes_dupsFlagged.bam	SRR1168068	@dbgap@:reads/SRP012000/SRS557012/SRX469780/SRR1168068/SRR1168068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PANZLR-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PANZLR-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02D	DNA	EFO	SRS557012	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02D A20153 library	PAIRED	GENOMIC	WGS	RANDOM	345	A20153	SRX469780		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PANZLR-41A-02D A20153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20153_5_lanes_dupsFlagged.bam	SRR1168068	@dbgap@:reads/SRP012000/SRS557012/SRX469780/SRR1168068/SRR1168068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02D	DNA	EFO	SRS557012	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02D A20153 library	PAIRED	GENOMIC	WGS	RANDOM	345	A20153	SRX469780		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PANZLR-41A-02D A20153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20153_5_lanes_dupsFlagged.bam	SRR1168068	@dbgap@:reads/SRP012000/SRS557012/SRX469780/SRR1168068/SRR1168068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PANZLR-41A-02D_TARGET-21-PANZLR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03D	DNA	EFO	SRS557005	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03D A20140 library	PAIRED	GENOMIC	WGS	RANDOM	255	A20140	SRX469773		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-09A-03D A20140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20140_3_lanes_dupsFlagged.bam	SRR1168018	@dbgap@:reads/SRP012000/SRS557005/SRX469773/SRR1168018/SRR1168018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARBTV-09A-03D.fusion.vcf	3						
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03D	DNA	EFO	SRS557005	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03D A20140 library	PAIRED	GENOMIC	WGS	RANDOM	255	A20140	SRX469773		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-09A-03D A20140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20140_3_lanes_dupsFlagged.bam	SRR1168018	@dbgap@:reads/SRP012000/SRS557005/SRX469773/SRR1168018/SRR1168018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARBTV-09A-03D.indel.vcf	3						
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03D	DNA	EFO	SRS557005	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03D A20140 library	PAIRED	GENOMIC	WGS	RANDOM	255	A20140	SRX469773		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-09A-03D A20140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20140_3_lanes_dupsFlagged.bam	SRR1168018	@dbgap@:reads/SRP012000/SRS557005/SRX469773/SRR1168018/SRR1168018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARBTV-09A-03D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARBTV-09A-03D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03D	DNA	EFO	SRS557005	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03D A20140 library	PAIRED	GENOMIC	WGS	RANDOM	255	A20140	SRX469773		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-09A-03D A20140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20140_3_lanes_dupsFlagged.bam	SRR1168018	@dbgap@:reads/SRP012000/SRS557005/SRX469773/SRR1168018/SRR1168018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03D	DNA	EFO	SRS557005	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03D A20140 library	PAIRED	GENOMIC	WGS	RANDOM	255	A20140	SRX469773		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-09A-03D A20140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20140_3_lanes_dupsFlagged.bam	SRR1168018	@dbgap@:reads/SRP012000/SRS557005/SRX469773/SRR1168018/SRR1168018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARBTV-15A-01D.fusion.vcf	3						
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARBTV-15A-01D.indel.vcf	3						
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARBTV-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARBTV-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-09A-03D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-15A-01D	DNA	EFO	SRS556981	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-15A-01D A20181 library	PAIRED	GENOMIC	WGS	RANDOM	271	A20181	SRX469749		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-15A-01D A20181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20181_4_lanes_dupsFlagged.bam	SRR1168056	@dbgap@:reads/SRP012000/SRS556981/SRX469749/SRR1168056/SRR1168056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02D	DNA	EFO	SRS557021	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02D A20141 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20141	SRX469789		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-41A-02D A20141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20141_7_lanes_dupsFlagged.bam	SRR1168053	@dbgap@:reads/SRP012000/SRS557021/SRX469789/SRR1168053/SRR1168053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARBTV-41A-02D.fusion.vcf	3						
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02D	DNA	EFO	SRS557021	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02D A20141 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20141	SRX469789		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-41A-02D A20141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20141_7_lanes_dupsFlagged.bam	SRR1168053	@dbgap@:reads/SRP012000/SRS557021/SRX469789/SRR1168053/SRR1168053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARBTV-41A-02D.indel.vcf	3						
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02D	DNA	EFO	SRS557021	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02D A20141 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20141	SRX469789		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-41A-02D A20141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20141_7_lanes_dupsFlagged.bam	SRR1168053	@dbgap@:reads/SRP012000/SRS557021/SRX469789/SRR1168053/SRR1168053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARBTV-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARBTV-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02D	DNA	EFO	SRS557021	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02D A20141 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20141	SRX469789		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-41A-02D A20141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20141_7_lanes_dupsFlagged.bam	SRR1168053	@dbgap@:reads/SRP012000/SRS557021/SRX469789/SRR1168053/SRR1168053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02D	DNA	EFO	SRS557021	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02D A20141 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20141	SRX469789		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARBTV-41A-02D A20141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20141_7_lanes_dupsFlagged.bam	SRR1168053	@dbgap@:reads/SRP012000/SRS557021/SRX469789/SRR1168053/SRR1168053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARBTV-41A-02D_TARGET-21-PARBTV-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-01D	DNA	EFO	SRS557013	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-01D A20126 library	PAIRED	GENOMIC	WGS	RANDOM	298	A20126	SRX469781		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARHRS-09A-01D A20126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20126_3_lanes_dupsFlagged.bam	SRR1168048	@dbgap@:reads/SRP012000/SRS557013/SRX469781/SRR1168048/SRR1168048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARHRS-09A-01D.fusion.vcf	3						
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-01D	DNA	EFO	SRS557013	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-01D A20126 library	PAIRED	GENOMIC	WGS	RANDOM	298	A20126	SRX469781		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARHRS-09A-01D A20126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20126_3_lanes_dupsFlagged.bam	SRR1168048	@dbgap@:reads/SRP012000/SRS557013/SRX469781/SRR1168048/SRR1168048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARHRS-09A-01D.indel.vcf	3						
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-01D	DNA	EFO	SRS557013	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-01D A20126 library	PAIRED	GENOMIC	WGS	RANDOM	298	A20126	SRX469781		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARHRS-09A-01D A20126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20126_3_lanes_dupsFlagged.bam	SRR1168048	@dbgap@:reads/SRP012000/SRS557013/SRX469781/SRR1168048/SRR1168048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARHRS-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARHRS-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-01D	DNA	EFO	SRS557013	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-01D A20126 library	PAIRED	GENOMIC	WGS	RANDOM	298	A20126	SRX469781		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARHRS-09A-01D A20126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20126_3_lanes_dupsFlagged.bam	SRR1168048	@dbgap@:reads/SRP012000/SRS557013/SRX469781/SRR1168048/SRR1168048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-01D	DNA	EFO	SRS557013	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-01D A20126 library	PAIRED	GENOMIC	WGS	RANDOM	298	A20126	SRX469781		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARHRS-09A-01D A20126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20126_3_lanes_dupsFlagged.bam	SRR1168048	@dbgap@:reads/SRP012000/SRS557013/SRX469781/SRR1168048/SRR1168048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARHRS-15A-01D.fusion.vcf	3						
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARHRS-15A-01D.indel.vcf	3						
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARHRS-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARHRS-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-09A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-15A-01D	DNA	EFO	SRS556993	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-15A-01D A20174 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20174	SRX469761		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARHRS-15A-01D A20174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20174_3_lanes_dupsFlagged.bam	SRR1168083	@dbgap@:reads/SRP012000/SRS556993/SRX469761/SRR1168083/SRR1168083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-41A-01D	DNA	EFO	SRS556985	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-41A-01D A20127 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20127	SRX469753		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARHRS-41A-01D A20127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20127_7_lanes_dupsFlagged.bam	SRR1168032	@dbgap@:reads/SRP012000/SRS556985/SRX469753/SRR1168032/SRR1168032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARHRS-41A-01D.fusion.vcf	3						
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-41A-01D	DNA	EFO	SRS556985	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-41A-01D A20127 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20127	SRX469753		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARHRS-41A-01D A20127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20127_7_lanes_dupsFlagged.bam	SRR1168032	@dbgap@:reads/SRP012000/SRS556985/SRX469753/SRR1168032/SRR1168032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARHRS-41A-01D.indel.vcf	3						
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-41A-01D	DNA	EFO	SRS556985	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-41A-01D A20127 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20127	SRX469753		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARHRS-41A-01D A20127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20127_7_lanes_dupsFlagged.bam	SRR1168032	@dbgap@:reads/SRP012000/SRS556985/SRX469753/SRR1168032/SRR1168032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARHRS-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARHRS-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-41A-01D	DNA	EFO	SRS556985	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-41A-01D A20127 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20127	SRX469753		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARHRS-41A-01D A20127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20127_7_lanes_dupsFlagged.bam	SRR1168032	@dbgap@:reads/SRP012000/SRS556985/SRX469753/SRR1168032/SRR1168032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-41A-01D	DNA	EFO	SRS556985	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-41A-01D A20127 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20127	SRX469753		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARHRS-41A-01D A20127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20127_7_lanes_dupsFlagged.bam	SRR1168032	@dbgap@:reads/SRP012000/SRS556985/SRX469753/SRR1168032/SRR1168032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARHRS-41A-01D_TARGET-21-PARHRS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02D	DNA	EFO	SRS556997	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02D A20136 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20136	SRX469765		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARLSL-09A-02D A20136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20136_3_lanes_dupsFlagged.bam	SRR1168089	@dbgap@:reads/SRP012000/SRS556997/SRX469765/SRR1168089/SRR1168089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARLSL-09A-02D.fusion.vcf	3						
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02D	DNA	EFO	SRS556997	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02D A20136 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20136	SRX469765		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARLSL-09A-02D A20136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20136_3_lanes_dupsFlagged.bam	SRR1168089	@dbgap@:reads/SRP012000/SRS556997/SRX469765/SRR1168089/SRR1168089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARLSL-09A-02D.indel.vcf	3						
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02D	DNA	EFO	SRS556997	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02D A20136 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20136	SRX469765		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARLSL-09A-02D A20136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20136_3_lanes_dupsFlagged.bam	SRR1168089	@dbgap@:reads/SRP012000/SRS556997/SRX469765/SRR1168089/SRR1168089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARLSL-09A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARLSL-09A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02D	DNA	EFO	SRS556997	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02D A20136 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20136	SRX469765		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARLSL-09A-02D A20136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20136_3_lanes_dupsFlagged.bam	SRR1168089	@dbgap@:reads/SRP012000/SRS556997/SRX469765/SRR1168089/SRR1168089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02D	DNA	EFO	SRS556997	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02D A20136 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20136	SRX469765		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PARLSL-09A-02D A20136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20136_3_lanes_dupsFlagged.bam	SRR1168089	@dbgap@:reads/SRP012000/SRS556997/SRX469765/SRR1168089/SRR1168089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARLSL-15A-01D.fusion.vcf	3						
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARLSL-15A-01D.indel.vcf	3						
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARLSL-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARLSL-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-09A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-15A-01D	DNA	EFO	SRS557029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-15A-01D A20179 library	PAIRED	GENOMIC	WGS	RANDOM	283	A20179	SRX469797		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PARLSL-15A-01D A20179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20179_3_lanes_dupsFlagged.bam	SRR1168049	@dbgap@:reads/SRP012000/SRS557029/SRX469797/SRR1168049/SRR1168049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02D	DNA	EFO	SRS556990	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02D A20137 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20137	SRX469758		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARLSL-41A-02D A20137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20137_7_lanes_dupsFlagged.bam	SRR1168093	@dbgap@:reads/SRP012000/SRS556990/SRX469758/SRR1168093/SRR1168093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARLSL-41A-02D.fusion.vcf	3						
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02D	DNA	EFO	SRS556990	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02D A20137 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20137	SRX469758		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARLSL-41A-02D A20137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20137_7_lanes_dupsFlagged.bam	SRR1168093	@dbgap@:reads/SRP012000/SRS556990/SRX469758/SRR1168093/SRR1168093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARLSL-41A-02D.indel.vcf	3						
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02D	DNA	EFO	SRS556990	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02D A20137 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20137	SRX469758		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARLSL-41A-02D A20137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20137_7_lanes_dupsFlagged.bam	SRR1168093	@dbgap@:reads/SRP012000/SRS556990/SRX469758/SRR1168093/SRR1168093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARLSL-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARLSL-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02D	DNA	EFO	SRS556990	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02D A20137 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20137	SRX469758		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARLSL-41A-02D A20137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20137_7_lanes_dupsFlagged.bam	SRR1168093	@dbgap@:reads/SRP012000/SRS556990/SRX469758/SRR1168093/SRR1168093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02D	DNA	EFO	SRS556990	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02D A20137 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20137	SRX469758		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARLSL-41A-02D A20137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20137_7_lanes_dupsFlagged.bam	SRR1168093	@dbgap@:reads/SRP012000/SRS556990/SRX469758/SRR1168093/SRR1168093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARLSL-41A-02D_TARGET-21-PARLSL-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01D	DNA	EFO	SRS556982	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01D A20134 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20134	SRX469750		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PARNAW-09A-01D A20134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20134_3_lanes_dupsFlagged.bam	SRR1168061	@dbgap@:reads/SRP012000/SRS556982/SRX469750/SRR1168061/SRR1168061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARNAW-09A-01D.fusion.vcf	3						
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01D	DNA	EFO	SRS556982	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01D A20134 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20134	SRX469750		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PARNAW-09A-01D A20134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20134_3_lanes_dupsFlagged.bam	SRR1168061	@dbgap@:reads/SRP012000/SRS556982/SRX469750/SRR1168061/SRR1168061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARNAW-09A-01D.indel.vcf	3						
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01D	DNA	EFO	SRS556982	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01D A20134 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20134	SRX469750		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PARNAW-09A-01D A20134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20134_3_lanes_dupsFlagged.bam	SRR1168061	@dbgap@:reads/SRP012000/SRS556982/SRX469750/SRR1168061/SRR1168061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARNAW-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARNAW-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01D	DNA	EFO	SRS556982	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01D A20134 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20134	SRX469750		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PARNAW-09A-01D A20134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20134_3_lanes_dupsFlagged.bam	SRR1168061	@dbgap@:reads/SRP012000/SRS556982/SRX469750/SRR1168061/SRR1168061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01D	DNA	EFO	SRS556982	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01D A20134 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20134	SRX469750		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PARNAW-09A-01D A20134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20134_3_lanes_dupsFlagged.bam	SRR1168061	@dbgap@:reads/SRP012000/SRS556982/SRX469750/SRR1168061/SRR1168061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARNAW-15A-01D.fusion.vcf	3						
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARNAW-15A-01D.indel.vcf	3						
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARNAW-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARNAW-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-09A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-15A-01D	DNA	EFO	SRS557016	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-15A-01D A20178 library	PAIRED	GENOMIC	WGS	RANDOM	329	A20178	SRX469784		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARNAW-15A-01D A20178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20178_3_lanes_dupsFlagged.bam	SRR1168071	@dbgap@:reads/SRP012000/SRS557016/SRX469784/SRR1168071/SRR1168071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01D	DNA	EFO	SRS557023	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01D A20135 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20135	SRX469791		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PARNAW-41A-01D A20135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20135_7_lanes_dupsFlagged.bam	SRR1168099	@dbgap@:reads/SRP012000/SRS557023/SRX469791/SRR1168099/SRR1168099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARNAW-41A-01D.fusion.vcf	3						
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01D	DNA	EFO	SRS557023	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01D A20135 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20135	SRX469791		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PARNAW-41A-01D A20135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20135_7_lanes_dupsFlagged.bam	SRR1168099	@dbgap@:reads/SRP012000/SRS557023/SRX469791/SRR1168099/SRR1168099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARNAW-41A-01D.indel.vcf	3						
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01D	DNA	EFO	SRS557023	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01D A20135 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20135	SRX469791		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PARNAW-41A-01D A20135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20135_7_lanes_dupsFlagged.bam	SRR1168099	@dbgap@:reads/SRP012000/SRS557023/SRX469791/SRR1168099/SRR1168099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARNAW-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARNAW-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01D	DNA	EFO	SRS557023	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01D A20135 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20135	SRX469791		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PARNAW-41A-01D A20135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20135_7_lanes_dupsFlagged.bam	SRR1168099	@dbgap@:reads/SRP012000/SRS557023/SRX469791/SRR1168099/SRR1168099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01D	DNA	EFO	SRS557023	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01D A20135 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20135	SRX469791		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PARNAW-41A-01D A20135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20135_7_lanes_dupsFlagged.bam	SRR1168099	@dbgap@:reads/SRP012000/SRS557023/SRX469791/SRR1168099/SRR1168099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARNAW-41A-01D_TARGET-21-PARNAW-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03D	DNA	EFO	SRS556964	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03D A20146 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20146	SRX469732		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARXYR-03A-03D A20146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20146_3_lanes_dupsFlagged.bam	SRR1168047	@dbgap@:reads/SRP012000/SRS556964/SRX469732/SRR1168047/SRR1168047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARXYR-03A-03D.fusion.vcf	3						
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03D	DNA	EFO	SRS556964	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03D A20146 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20146	SRX469732		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARXYR-03A-03D A20146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20146_3_lanes_dupsFlagged.bam	SRR1168047	@dbgap@:reads/SRP012000/SRS556964/SRX469732/SRR1168047/SRR1168047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARXYR-03A-03D.indel.vcf	3						
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03D	DNA	EFO	SRS556964	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03D A20146 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20146	SRX469732		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARXYR-03A-03D A20146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20146_3_lanes_dupsFlagged.bam	SRR1168047	@dbgap@:reads/SRP012000/SRS556964/SRX469732/SRR1168047/SRR1168047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARXYR-03A-03D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARXYR-03A-03D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03D	DNA	EFO	SRS556964	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03D A20146 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20146	SRX469732		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARXYR-03A-03D A20146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20146_3_lanes_dupsFlagged.bam	SRR1168047	@dbgap@:reads/SRP012000/SRS556964/SRX469732/SRR1168047/SRR1168047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03D	DNA	EFO	SRS556964	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03D A20146 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20146	SRX469732		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARXYR-03A-03D A20146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20146_3_lanes_dupsFlagged.bam	SRR1168047	@dbgap@:reads/SRP012000/SRS556964/SRX469732/SRR1168047/SRR1168047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARXYR-15A-01D.fusion.vcf	3						
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARXYR-15A-01D.indel.vcf	3						
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARXYR-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARXYR-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-03A-03D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-15A-01D	DNA	EFO	SRS557014	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-15A-01D A20184 library	PAIRED	GENOMIC	WGS	RANDOM	310	A20184	SRX469782		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PARXYR-15A-01D A20184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20184_3_lanes_dupsFlagged.bam	SRR1168095	@dbgap@:reads/SRP012000/SRS557014/SRX469782/SRR1168095/SRR1168095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02D	DNA	EFO	SRS557011	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02D A20147 library	PAIRED	GENOMIC	WGS	RANDOM	288	A20147	SRX469779		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARXYR-41A-02D A20147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20147_7_lanes_dupsFlagged.bam	SRR1168062	@dbgap@:reads/SRP012000/SRS557011/SRX469779/SRR1168062/SRR1168062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARXYR-41A-02D.fusion.vcf	3						
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02D	DNA	EFO	SRS557011	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02D A20147 library	PAIRED	GENOMIC	WGS	RANDOM	288	A20147	SRX469779		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARXYR-41A-02D A20147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20147_7_lanes_dupsFlagged.bam	SRR1168062	@dbgap@:reads/SRP012000/SRS557011/SRX469779/SRR1168062/SRR1168062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARXYR-41A-02D.indel.vcf	3						
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02D	DNA	EFO	SRS557011	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02D A20147 library	PAIRED	GENOMIC	WGS	RANDOM	288	A20147	SRX469779		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARXYR-41A-02D A20147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20147_7_lanes_dupsFlagged.bam	SRR1168062	@dbgap@:reads/SRP012000/SRS557011/SRX469779/SRR1168062/SRR1168062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARXYR-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARXYR-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02D	DNA	EFO	SRS557011	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02D A20147 library	PAIRED	GENOMIC	WGS	RANDOM	288	A20147	SRX469779		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARXYR-41A-02D A20147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20147_7_lanes_dupsFlagged.bam	SRR1168062	@dbgap@:reads/SRP012000/SRS557011/SRX469779/SRR1168062/SRR1168062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02D	DNA	EFO	SRS557011	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02D A20147 library	PAIRED	GENOMIC	WGS	RANDOM	288	A20147	SRX469779		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PARXYR-41A-02D A20147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20147_7_lanes_dupsFlagged.bam	SRR1168062	@dbgap@:reads/SRP012000/SRS557011/SRX469779/SRR1168062/SRR1168062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARXYR-41A-02D_TARGET-21-PARXYR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01D	DNA	EFO	SRS556956	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01D A20116 library	PAIRED	GENOMIC	WGS	RANDOM	272	A20116	SRX469724		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARZIA-09A-01D A20116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20116_3_lanes_dupsFlagged.bam	SRR1168102	@dbgap@:reads/SRP012000/SRS556956/SRX469724/SRR1168102/SRR1168102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARZIA-09A-01D.fusion.vcf	3						
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01D	DNA	EFO	SRS556956	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01D A20116 library	PAIRED	GENOMIC	WGS	RANDOM	272	A20116	SRX469724		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARZIA-09A-01D A20116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20116_3_lanes_dupsFlagged.bam	SRR1168102	@dbgap@:reads/SRP012000/SRS556956/SRX469724/SRR1168102/SRR1168102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARZIA-09A-01D.indel.vcf	3						
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01D	DNA	EFO	SRS556956	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01D A20116 library	PAIRED	GENOMIC	WGS	RANDOM	272	A20116	SRX469724		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARZIA-09A-01D A20116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20116_3_lanes_dupsFlagged.bam	SRR1168102	@dbgap@:reads/SRP012000/SRS556956/SRX469724/SRR1168102/SRR1168102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARZIA-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARZIA-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01D	DNA	EFO	SRS556956	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01D A20116 library	PAIRED	GENOMIC	WGS	RANDOM	272	A20116	SRX469724		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARZIA-09A-01D A20116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20116_3_lanes_dupsFlagged.bam	SRR1168102	@dbgap@:reads/SRP012000/SRS556956/SRX469724/SRR1168102/SRR1168102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01D	DNA	EFO	SRS556956	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01D A20116 library	PAIRED	GENOMIC	WGS	RANDOM	272	A20116	SRX469724		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARZIA-09A-01D A20116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20116_3_lanes_dupsFlagged.bam	SRR1168102	@dbgap@:reads/SRP012000/SRS556956/SRX469724/SRR1168102/SRR1168102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARZIA-15A-01D.fusion.vcf	3						
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARZIA-15A-01D.indel.vcf	3						
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARZIA-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARZIA-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-09A-01D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-15A-01D	DNA	EFO	SRS557033	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-15A-01D A20169 library	PAIRED	GENOMIC	WGS	RANDOM	355	A20169	SRX469801		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PARZIA-15A-01D A20169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20169_3_lanes_dupsFlagged.bam	SRR1168069	@dbgap@:reads/SRP012000/SRS557033/SRX469801/SRR1168069/SRR1168069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02D	DNA	EFO	SRS556995	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02D A20117 library	PAIRED	GENOMIC	WGS	RANDOM	281	A20117	SRX469763		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARZIA-41A-02D A20117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20117_3_lanes_dupsFlagged.bam	SRR1168092	@dbgap@:reads/SRP012000/SRS556995/SRX469763/SRR1168092/SRR1168092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARZIA-41A-02D.fusion.vcf	3						
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02D	DNA	EFO	SRS556995	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02D A20117 library	PAIRED	GENOMIC	WGS	RANDOM	281	A20117	SRX469763		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARZIA-41A-02D A20117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20117_3_lanes_dupsFlagged.bam	SRR1168092	@dbgap@:reads/SRP012000/SRS556995/SRX469763/SRR1168092/SRR1168092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PARZIA-41A-02D.indel.vcf	3						
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02D	DNA	EFO	SRS556995	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02D A20117 library	PAIRED	GENOMIC	WGS	RANDOM	281	A20117	SRX469763		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARZIA-41A-02D A20117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20117_3_lanes_dupsFlagged.bam	SRR1168092	@dbgap@:reads/SRP012000/SRS556995/SRX469763/SRR1168092/SRR1168092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PARZIA-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PARZIA-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02D	DNA	EFO	SRS556995	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02D A20117 library	PAIRED	GENOMIC	WGS	RANDOM	281	A20117	SRX469763		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARZIA-41A-02D A20117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20117_3_lanes_dupsFlagged.bam	SRR1168092	@dbgap@:reads/SRP012000/SRS556995/SRX469763/SRR1168092/SRR1168092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02D	DNA	EFO	SRS556995	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02D A20117 library	PAIRED	GENOMIC	WGS	RANDOM	281	A20117	SRX469763		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PARZIA-41A-02D A20117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20117_3_lanes_dupsFlagged.bam	SRR1168092	@dbgap@:reads/SRP012000/SRS556995/SRX469763/SRR1168092/SRR1168092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PARZIA-41A-02D_TARGET-21-PARZIA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02D	DNA	EFO	SRS556973	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02D A20159 library	PAIRED	GENOMIC	WGS	RANDOM	316	A20159	SRX469741		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASDKZ-03A-02D A20159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20159_7_lanes_dupsFlagged.bam	SRR1168090	@dbgap@:reads/SRP012000/SRS556973/SRX469741/SRR1168090/SRR1168090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDKZ-03A-02D.fusion.vcf	3						
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02D	DNA	EFO	SRS556973	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02D A20159 library	PAIRED	GENOMIC	WGS	RANDOM	316	A20159	SRX469741		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASDKZ-03A-02D A20159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20159_7_lanes_dupsFlagged.bam	SRR1168090	@dbgap@:reads/SRP012000/SRS556973/SRX469741/SRR1168090/SRR1168090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDKZ-03A-02D.indel.vcf	3						
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02D	DNA	EFO	SRS556973	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02D A20159 library	PAIRED	GENOMIC	WGS	RANDOM	316	A20159	SRX469741		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASDKZ-03A-02D A20159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20159_7_lanes_dupsFlagged.bam	SRR1168090	@dbgap@:reads/SRP012000/SRS556973/SRX469741/SRR1168090/SRR1168090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASDKZ-03A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASDKZ-03A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02D	DNA	EFO	SRS556973	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02D A20159 library	PAIRED	GENOMIC	WGS	RANDOM	316	A20159	SRX469741		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASDKZ-03A-02D A20159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20159_7_lanes_dupsFlagged.bam	SRR1168090	@dbgap@:reads/SRP012000/SRS556973/SRX469741/SRR1168090/SRR1168090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02D	DNA	EFO	SRS556973	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02D A20159 library	PAIRED	GENOMIC	WGS	RANDOM	316	A20159	SRX469741		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASDKZ-03A-02D A20159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20159_7_lanes_dupsFlagged.bam	SRR1168090	@dbgap@:reads/SRP012000/SRS556973/SRX469741/SRR1168090/SRR1168090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDKZ-15A-01D.fusion.vcf	3						
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDKZ-15A-01D.indel.vcf	3						
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASDKZ-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASDKZ-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-03A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-15A-01D	DNA	EFO	SRS556967	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-15A-01D A20192 library	PAIRED	GENOMIC	WGS	RANDOM	336	A20192	SRX469735		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASDKZ-15A-01D A20192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20192_3_lanes_dupsFlagged.bam	SRR1168100	@dbgap@:reads/SRP012000/SRS556967/SRX469735/SRR1168100/SRR1168100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-02D	DNA	EFO	SRS557041	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-02D A20160 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20160	SRX469809		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASDKZ-41A-02D A20160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20160_7_lanes_dupsFlagged.bam	SRR1168064	@dbgap@:reads/SRP012000/SRS557041/SRX469809/SRR1168064/SRR1168064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDKZ-41A-02D.fusion.vcf	3						
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-02D	DNA	EFO	SRS557041	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-02D A20160 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20160	SRX469809		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASDKZ-41A-02D A20160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20160_7_lanes_dupsFlagged.bam	SRR1168064	@dbgap@:reads/SRP012000/SRS557041/SRX469809/SRR1168064/SRR1168064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDKZ-41A-02D.indel.vcf	3						
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-02D	DNA	EFO	SRS557041	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-02D A20160 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20160	SRX469809		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASDKZ-41A-02D A20160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20160_7_lanes_dupsFlagged.bam	SRR1168064	@dbgap@:reads/SRP012000/SRS557041/SRX469809/SRR1168064/SRR1168064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASDKZ-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASDKZ-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-02D	DNA	EFO	SRS557041	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-02D A20160 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20160	SRX469809		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASDKZ-41A-02D A20160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20160_7_lanes_dupsFlagged.bam	SRR1168064	@dbgap@:reads/SRP012000/SRS557041/SRX469809/SRR1168064/SRR1168064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-02D	DNA	EFO	SRS557041	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-02D A20160 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20160	SRX469809		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASDKZ-41A-02D A20160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20160_7_lanes_dupsFlagged.bam	SRR1168064	@dbgap@:reads/SRP012000/SRS557041/SRX469809/SRR1168064/SRR1168064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDKZ-41A-02D_TARGET-21-PASDKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02D	DNA	EFO	SRS556957	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02D A20161 library	PAIRED	GENOMIC	WGS	RANDOM	358	A20161	SRX469725		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASDXR-09A-02D A20161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20161_3_lanes_dupsFlagged.bam	SRR1168039	@dbgap@:reads/SRP012000/SRS556957/SRX469725/SRR1168039/SRR1168039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDXR-09A-02D.fusion.vcf	3						
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02D	DNA	EFO	SRS556957	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02D A20161 library	PAIRED	GENOMIC	WGS	RANDOM	358	A20161	SRX469725		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASDXR-09A-02D A20161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20161_3_lanes_dupsFlagged.bam	SRR1168039	@dbgap@:reads/SRP012000/SRS556957/SRX469725/SRR1168039/SRR1168039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDXR-09A-02D.indel.vcf	3						
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02D	DNA	EFO	SRS556957	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02D A20161 library	PAIRED	GENOMIC	WGS	RANDOM	358	A20161	SRX469725		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASDXR-09A-02D A20161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20161_3_lanes_dupsFlagged.bam	SRR1168039	@dbgap@:reads/SRP012000/SRS556957/SRX469725/SRR1168039/SRR1168039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASDXR-09A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASDXR-09A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02D	DNA	EFO	SRS556957	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02D A20161 library	PAIRED	GENOMIC	WGS	RANDOM	358	A20161	SRX469725		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASDXR-09A-02D A20161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20161_3_lanes_dupsFlagged.bam	SRR1168039	@dbgap@:reads/SRP012000/SRS556957/SRX469725/SRR1168039/SRR1168039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02D	DNA	EFO	SRS556957	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02D A20161 library	PAIRED	GENOMIC	WGS	RANDOM	358	A20161	SRX469725		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASDXR-09A-02D A20161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20161_3_lanes_dupsFlagged.bam	SRR1168039	@dbgap@:reads/SRP012000/SRS556957/SRX469725/SRR1168039/SRR1168039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDXR-15A-01D.fusion.vcf	3						
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDXR-15A-01D.indel.vcf	3						
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASDXR-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASDXR-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-09A-02D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-15A-01D	DNA	EFO	SRS556992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-15A-01D A20193 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20193	SRX469760		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASDXR-15A-01D A20193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20193_4_lanes_dupsFlagged.bam	SRR1168060	@dbgap@:reads/SRP012000/SRS556992/SRX469760/SRR1168060/SRR1168060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03D	DNA	EFO	SRS557036	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03D A20162 library	PAIRED	GENOMIC	WGS	RANDOM	293	A20162	SRX469804		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASDXR-41A-03D A20162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20162_5_lanes_dupsFlagged.bam	SRR1168057	@dbgap@:reads/SRP012000/SRS557036/SRX469804/SRR1168057/SRR1168057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDXR-41A-03D.fusion.vcf	3						
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03D	DNA	EFO	SRS557036	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03D A20162 library	PAIRED	GENOMIC	WGS	RANDOM	293	A20162	SRX469804		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASDXR-41A-03D A20162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20162_5_lanes_dupsFlagged.bam	SRR1168057	@dbgap@:reads/SRP012000/SRS557036/SRX469804/SRR1168057/SRR1168057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASDXR-41A-03D.indel.vcf	3						
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03D	DNA	EFO	SRS557036	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03D A20162 library	PAIRED	GENOMIC	WGS	RANDOM	293	A20162	SRX469804		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASDXR-41A-03D A20162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20162_5_lanes_dupsFlagged.bam	SRR1168057	@dbgap@:reads/SRP012000/SRS557036/SRX469804/SRR1168057/SRR1168057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASDXR-41A-03D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASDXR-41A-03D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03D	DNA	EFO	SRS557036	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03D A20162 library	PAIRED	GENOMIC	WGS	RANDOM	293	A20162	SRX469804		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASDXR-41A-03D A20162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20162_5_lanes_dupsFlagged.bam	SRR1168057	@dbgap@:reads/SRP012000/SRS557036/SRX469804/SRR1168057/SRR1168057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03D	DNA	EFO	SRS557036	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03D A20162 library	PAIRED	GENOMIC	WGS	RANDOM	293	A20162	SRX469804		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASDXR-41A-03D A20162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20162_5_lanes_dupsFlagged.bam	SRR1168057	@dbgap@:reads/SRP012000/SRS557036/SRX469804/SRR1168057/SRR1168057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASDXR-41A-03D_TARGET-21-PASDXR-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01D	DNA	EFO	SRS557008	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01D A20124 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20124	SRX469776		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASFHK-09A-01D A20124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20124_3_lanes_dupsFlagged.bam	SRR1168065	@dbgap@:reads/SRP012000/SRS557008/SRX469776/SRR1168065/SRR1168065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFHK-09A-01D.fusion.vcf	3						
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01D	DNA	EFO	SRS557008	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01D A20124 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20124	SRX469776		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASFHK-09A-01D A20124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20124_3_lanes_dupsFlagged.bam	SRR1168065	@dbgap@:reads/SRP012000/SRS557008/SRX469776/SRR1168065/SRR1168065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFHK-09A-01D.indel.vcf	3						
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01D	DNA	EFO	SRS557008	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01D A20124 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20124	SRX469776		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASFHK-09A-01D A20124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20124_3_lanes_dupsFlagged.bam	SRR1168065	@dbgap@:reads/SRP012000/SRS557008/SRX469776/SRR1168065/SRR1168065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASFHK-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASFHK-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01D	DNA	EFO	SRS557008	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01D A20124 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20124	SRX469776		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASFHK-09A-01D A20124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20124_3_lanes_dupsFlagged.bam	SRR1168065	@dbgap@:reads/SRP012000/SRS557008/SRX469776/SRR1168065/SRR1168065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01D	DNA	EFO	SRS557008	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01D A20124 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20124	SRX469776		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASFHK-09A-01D A20124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20124_3_lanes_dupsFlagged.bam	SRR1168065	@dbgap@:reads/SRP012000/SRS557008/SRX469776/SRR1168065/SRR1168065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFHK-15A-01D.fusion.vcf	3						
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFHK-15A-01D.indel.vcf	3						
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASFHK-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASFHK-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-09A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-15A-01D	DNA	EFO	SRS557006	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-15A-01D A20173 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20173	SRX469774		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASFHK-15A-01D A20173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20173_3_lanes_dupsFlagged.bam	SRR1168026	@dbgap@:reads/SRP012000/SRS557006/SRX469774/SRR1168026/SRR1168026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01D	DNA	EFO	SRS557026	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01D A20125 library	PAIRED	GENOMIC	WGS	RANDOM	285	A20125	SRX469794		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASFHK-41A-01D A20125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20125_4_lanes_dupsFlagged.bam	SRR1168040	@dbgap@:reads/SRP012000/SRS557026/SRX469794/SRR1168040/SRR1168040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFHK-41A-01D.fusion.vcf	3						
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01D	DNA	EFO	SRS557026	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01D A20125 library	PAIRED	GENOMIC	WGS	RANDOM	285	A20125	SRX469794		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASFHK-41A-01D A20125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20125_4_lanes_dupsFlagged.bam	SRR1168040	@dbgap@:reads/SRP012000/SRS557026/SRX469794/SRR1168040/SRR1168040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFHK-41A-01D.indel.vcf	3						
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01D	DNA	EFO	SRS557026	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01D A20125 library	PAIRED	GENOMIC	WGS	RANDOM	285	A20125	SRX469794		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASFHK-41A-01D A20125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20125_4_lanes_dupsFlagged.bam	SRR1168040	@dbgap@:reads/SRP012000/SRS557026/SRX469794/SRR1168040/SRR1168040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASFHK-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASFHK-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01D	DNA	EFO	SRS557026	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01D A20125 library	PAIRED	GENOMIC	WGS	RANDOM	285	A20125	SRX469794		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASFHK-41A-01D A20125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20125_4_lanes_dupsFlagged.bam	SRR1168040	@dbgap@:reads/SRP012000/SRS557026/SRX469794/SRR1168040/SRR1168040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01D	DNA	EFO	SRS557026	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01D A20125 library	PAIRED	GENOMIC	WGS	RANDOM	285	A20125	SRX469794		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASFHK-41A-01D A20125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20125_4_lanes_dupsFlagged.bam	SRR1168040	@dbgap@:reads/SRP012000/SRS557026/SRX469794/SRR1168040/SRR1168040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFHK-41A-01D_TARGET-21-PASFHK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01D	DNA	EFO	SRS557040	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01D A20157 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20157	SRX469808		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFJJ-09A-01D A20157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20157_3_lanes_dupsFlagged.bam	SRR1168074	@dbgap@:reads/SRP012000/SRS557040/SRX469808/SRR1168074/SRR1168074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFJJ-09A-01D.fusion.vcf	3						
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01D	DNA	EFO	SRS557040	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01D A20157 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20157	SRX469808		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFJJ-09A-01D A20157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20157_3_lanes_dupsFlagged.bam	SRR1168074	@dbgap@:reads/SRP012000/SRS557040/SRX469808/SRR1168074/SRR1168074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFJJ-09A-01D.indel.vcf	3						
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01D	DNA	EFO	SRS557040	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01D A20157 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20157	SRX469808		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFJJ-09A-01D A20157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20157_3_lanes_dupsFlagged.bam	SRR1168074	@dbgap@:reads/SRP012000/SRS557040/SRX469808/SRR1168074/SRR1168074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASFJJ-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASFJJ-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01D	DNA	EFO	SRS557040	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01D A20157 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20157	SRX469808		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFJJ-09A-01D A20157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20157_3_lanes_dupsFlagged.bam	SRR1168074	@dbgap@:reads/SRP012000/SRS557040/SRX469808/SRR1168074/SRR1168074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01D	DNA	EFO	SRS557040	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01D A20157 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20157	SRX469808		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFJJ-09A-01D A20157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20157_3_lanes_dupsFlagged.bam	SRR1168074	@dbgap@:reads/SRP012000/SRS557040/SRX469808/SRR1168074/SRR1168074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFJJ-15A-01D.fusion.vcf	3						
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFJJ-15A-01D.indel.vcf	3						
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASFJJ-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASFJJ-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-09A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-15A-01D	DNA	EFO	SRS557037	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-15A-01D A20191 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20191	SRX469805		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-15A-01D A20191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20191_3_lanes_dupsFlagged.bam	SRR1168070	@dbgap@:reads/SRP012000/SRS557037/SRX469805/SRR1168070/SRR1168070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01D	DNA	EFO	SRS557003	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01D A20158 library	PAIRED	GENOMIC	WGS	RANDOM	313	A20158	SRX469771		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-41A-01D A20158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20158_7_lanes_dupsFlagged.bam	SRR1168072	@dbgap@:reads/SRP012000/SRS557003/SRX469771/SRR1168072/SRR1168072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFJJ-41A-01D.fusion.vcf	3						
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01D	DNA	EFO	SRS557003	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01D A20158 library	PAIRED	GENOMIC	WGS	RANDOM	313	A20158	SRX469771		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-41A-01D A20158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20158_7_lanes_dupsFlagged.bam	SRR1168072	@dbgap@:reads/SRP012000/SRS557003/SRX469771/SRR1168072/SRR1168072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFJJ-41A-01D.indel.vcf	3						
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01D	DNA	EFO	SRS557003	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01D A20158 library	PAIRED	GENOMIC	WGS	RANDOM	313	A20158	SRX469771		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-41A-01D A20158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20158_7_lanes_dupsFlagged.bam	SRR1168072	@dbgap@:reads/SRP012000/SRS557003/SRX469771/SRR1168072/SRR1168072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASFJJ-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASFJJ-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01D	DNA	EFO	SRS557003	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01D A20158 library	PAIRED	GENOMIC	WGS	RANDOM	313	A20158	SRX469771		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-41A-01D A20158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20158_7_lanes_dupsFlagged.bam	SRR1168072	@dbgap@:reads/SRP012000/SRS557003/SRX469771/SRR1168072/SRR1168072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01D	DNA	EFO	SRS557003	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01D A20158 library	PAIRED	GENOMIC	WGS	RANDOM	313	A20158	SRX469771		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFJJ-41A-01D A20158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20158_7_lanes_dupsFlagged.bam	SRR1168072	@dbgap@:reads/SRP012000/SRS557003/SRX469771/SRR1168072/SRR1168072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFJJ-41A-01D_TARGET-21-PASFJJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-09A-04D	DNA	EFO	SRS557035	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-09A-04D A20165 library	PAIRED	GENOMIC	WGS	RANDOM	257	A20165	SRX469803		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-09A-04D A20165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20165_3_lanes_dupsFlagged.bam	SRR1168024	@dbgap@:reads/SRP012000/SRS557035/SRX469803/SRR1168024/SRR1168024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFLG-09A-04D.fusion.vcf	3						
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-09A-04D	DNA	EFO	SRS557035	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-09A-04D A20165 library	PAIRED	GENOMIC	WGS	RANDOM	257	A20165	SRX469803		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-09A-04D A20165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20165_3_lanes_dupsFlagged.bam	SRR1168024	@dbgap@:reads/SRP012000/SRS557035/SRX469803/SRR1168024/SRR1168024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFLG-09A-04D.indel.vcf	3						
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-09A-04D	DNA	EFO	SRS557035	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-09A-04D A20165 library	PAIRED	GENOMIC	WGS	RANDOM	257	A20165	SRX469803		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-09A-04D A20165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20165_3_lanes_dupsFlagged.bam	SRR1168024	@dbgap@:reads/SRP012000/SRS557035/SRX469803/SRR1168024/SRR1168024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASFLG-09A-04D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASFLG-09A-04D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-09A-04D	DNA	EFO	SRS557035	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-09A-04D A20165 library	PAIRED	GENOMIC	WGS	RANDOM	257	A20165	SRX469803		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-09A-04D A20165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20165_3_lanes_dupsFlagged.bam	SRR1168024	@dbgap@:reads/SRP012000/SRS557035/SRX469803/SRR1168024/SRR1168024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-09A-04D	DNA	EFO	SRS557035	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-09A-04D A20165 library	PAIRED	GENOMIC	WGS	RANDOM	257	A20165	SRX469803		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-09A-04D A20165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20165_3_lanes_dupsFlagged.bam	SRR1168024	@dbgap@:reads/SRP012000/SRS557035/SRX469803/SRR1168024/SRR1168024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFLG-15A-01D.fusion.vcf	3						
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFLG-15A-01D.indel.vcf	3						
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASFLG-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASFLG-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-09A-04D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-15A-01D	DNA	EFO	SRS557009	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-15A-01D A20195 library	PAIRED	GENOMIC	WGS	RANDOM	277	A20195	SRX469777		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASFLG-15A-01D A20195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20195_3_lanes_dupsFlagged.bam	SRR1168021	@dbgap@:reads/SRP012000/SRS557009/SRX469777/SRR1168021/SRR1168021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-02D	DNA	EFO	SRS556984	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-02D A20166 library	PAIRED	GENOMIC	WGS	RANDOM	319	A20166	SRX469752		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFLG-41A-02D A20166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20166_7_lanes_dupsFlagged.bam	SRR1168023	@dbgap@:reads/SRP012000/SRS556984/SRX469752/SRR1168023/SRR1168023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFLG-41A-02D.fusion.vcf	3						
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-02D	DNA	EFO	SRS556984	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-02D A20166 library	PAIRED	GENOMIC	WGS	RANDOM	319	A20166	SRX469752		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFLG-41A-02D A20166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20166_7_lanes_dupsFlagged.bam	SRR1168023	@dbgap@:reads/SRP012000/SRS556984/SRX469752/SRR1168023/SRR1168023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASFLG-41A-02D.indel.vcf	3						
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-02D	DNA	EFO	SRS556984	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-02D A20166 library	PAIRED	GENOMIC	WGS	RANDOM	319	A20166	SRX469752		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFLG-41A-02D A20166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20166_7_lanes_dupsFlagged.bam	SRR1168023	@dbgap@:reads/SRP012000/SRS556984/SRX469752/SRR1168023/SRR1168023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASFLG-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASFLG-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-02D	DNA	EFO	SRS556984	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-02D A20166 library	PAIRED	GENOMIC	WGS	RANDOM	319	A20166	SRX469752		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFLG-41A-02D A20166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20166_7_lanes_dupsFlagged.bam	SRR1168023	@dbgap@:reads/SRP012000/SRS556984/SRX469752/SRR1168023/SRR1168023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-02D	DNA	EFO	SRS556984	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-02D A20166 library	PAIRED	GENOMIC	WGS	RANDOM	319	A20166	SRX469752		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASFLG-41A-02D A20166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20166_7_lanes_dupsFlagged.bam	SRR1168023	@dbgap@:reads/SRP012000/SRS556984/SRX469752/SRR1168023/SRR1168023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASFLG-41A-02D_TARGET-21-PASFLG-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01D	DNA	EFO	SRS557022	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01D A20132 library	PAIRED	GENOMIC	WGS	RANDOM	275	A20132	SRX469790		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PASIGA-09A-01D A20132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20132_5_lanes_dupsFlagged.bam	SRR1168027	@dbgap@:reads/SRP012000/SRS557022/SRX469790/SRR1168027/SRR1168027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASIGA-09A-01D.fusion.vcf	3						
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01D	DNA	EFO	SRS557022	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01D A20132 library	PAIRED	GENOMIC	WGS	RANDOM	275	A20132	SRX469790		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PASIGA-09A-01D A20132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20132_5_lanes_dupsFlagged.bam	SRR1168027	@dbgap@:reads/SRP012000/SRS557022/SRX469790/SRR1168027/SRR1168027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASIGA-09A-01D.indel.vcf	3						
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01D	DNA	EFO	SRS557022	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01D A20132 library	PAIRED	GENOMIC	WGS	RANDOM	275	A20132	SRX469790		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PASIGA-09A-01D A20132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20132_5_lanes_dupsFlagged.bam	SRR1168027	@dbgap@:reads/SRP012000/SRS557022/SRX469790/SRR1168027/SRR1168027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASIGA-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASIGA-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01D	DNA	EFO	SRS557022	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01D A20132 library	PAIRED	GENOMIC	WGS	RANDOM	275	A20132	SRX469790		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PASIGA-09A-01D A20132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20132_5_lanes_dupsFlagged.bam	SRR1168027	@dbgap@:reads/SRP012000/SRS557022/SRX469790/SRR1168027/SRR1168027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01D	DNA	EFO	SRS557022	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01D A20132 library	PAIRED	GENOMIC	WGS	RANDOM	275	A20132	SRX469790		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PASIGA-09A-01D A20132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20132_5_lanes_dupsFlagged.bam	SRR1168027	@dbgap@:reads/SRP012000/SRS557022/SRX469790/SRR1168027/SRR1168027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASIGA-15A-01D.fusion.vcf	3						
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASIGA-15A-01D.indel.vcf	3						
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASIGA-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASIGA-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-09A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-15A-01D	DNA	EFO	SRS557019	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-15A-01D A20177 library	PAIRED	GENOMIC	WGS	RANDOM	360	A20177	SRX469787		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PASIGA-15A-01D A20177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20177_3_lanes_dupsFlagged.bam	SRR1168096	@dbgap@:reads/SRP012000/SRS557019/SRX469787/SRR1168096/SRR1168096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01D	DNA	EFO	SRS556978	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01D A20133 library	PAIRED	GENOMIC	WGS	RANDOM	280	A20133	SRX469746		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PASIGA-41A-01D A20133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20133_8_lanes_dupsFlagged.bam	SRR1168088	@dbgap@:reads/SRP012000/SRS556978/SRX469746/SRR1168088/SRR1168088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASIGA-41A-01D.fusion.vcf	3						
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01D	DNA	EFO	SRS556978	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01D A20133 library	PAIRED	GENOMIC	WGS	RANDOM	280	A20133	SRX469746		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PASIGA-41A-01D A20133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20133_8_lanes_dupsFlagged.bam	SRR1168088	@dbgap@:reads/SRP012000/SRS556978/SRX469746/SRR1168088/SRR1168088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASIGA-41A-01D.indel.vcf	3						
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01D	DNA	EFO	SRS556978	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01D A20133 library	PAIRED	GENOMIC	WGS	RANDOM	280	A20133	SRX469746		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PASIGA-41A-01D A20133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20133_8_lanes_dupsFlagged.bam	SRR1168088	@dbgap@:reads/SRP012000/SRS556978/SRX469746/SRR1168088/SRR1168088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASIGA-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASIGA-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01D	DNA	EFO	SRS556978	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01D A20133 library	PAIRED	GENOMIC	WGS	RANDOM	280	A20133	SRX469746		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PASIGA-41A-01D A20133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20133_8_lanes_dupsFlagged.bam	SRR1168088	@dbgap@:reads/SRP012000/SRS556978/SRX469746/SRR1168088/SRR1168088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01D	DNA	EFO	SRS556978	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01D A20133 library	PAIRED	GENOMIC	WGS	RANDOM	280	A20133	SRX469746		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PASIGA-41A-01D A20133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20133_8_lanes_dupsFlagged.bam	SRR1168088	@dbgap@:reads/SRP012000/SRS556978/SRX469746/SRR1168088/SRR1168088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASIGA-41A-01D_TARGET-21-PASIGA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01D	DNA	EFO	SRS557001	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01D A20197 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20197	SRX469769		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASLZE-09A-01D A20197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20197_4_lanes_dupsFlagged.bam	SRR1168042	@dbgap@:reads/SRP012000/SRS557001/SRX469769/SRR1168042/SRR1168042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASLZE-09A-01D.fusion.vcf	3						
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01D	DNA	EFO	SRS557001	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01D A20197 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20197	SRX469769		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASLZE-09A-01D A20197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20197_4_lanes_dupsFlagged.bam	SRR1168042	@dbgap@:reads/SRP012000/SRS557001/SRX469769/SRR1168042/SRR1168042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASLZE-09A-01D.indel.vcf	3						
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01D	DNA	EFO	SRS557001	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01D A20197 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20197	SRX469769		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASLZE-09A-01D A20197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20197_4_lanes_dupsFlagged.bam	SRR1168042	@dbgap@:reads/SRP012000/SRS557001/SRX469769/SRR1168042/SRR1168042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASLZE-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASLZE-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01D	DNA	EFO	SRS557001	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01D A20197 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20197	SRX469769		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASLZE-09A-01D A20197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20197_4_lanes_dupsFlagged.bam	SRR1168042	@dbgap@:reads/SRP012000/SRS557001/SRX469769/SRR1168042/SRR1168042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01D	DNA	EFO	SRS557001	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01D A20197 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20197	SRX469769		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASLZE-09A-01D A20197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20197_4_lanes_dupsFlagged.bam	SRR1168042	@dbgap@:reads/SRP012000/SRS557001/SRX469769/SRR1168042/SRR1168042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASLZE-15A-01D.fusion.vcf	3						
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASLZE-15A-01D.indel.vcf	3						
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASLZE-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASLZE-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-09A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-15A-01D	DNA	EFO	SRS556965	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-15A-01D A20201 library	PAIRED	GENOMIC	WGS	RANDOM	362	A20201	SRX469733		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-01	TARGET-21-PASLZE-15A-01D A20201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20201_3_lanes_dupsFlagged.bam	SRR1168066	@dbgap@:reads/SRP012000/SRS556965/SRX469733/SRR1168066/SRR1168066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-01D	DNA	EFO	SRS556959	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-01D A20198 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20198	SRX469727		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASLZE-41A-01D A20198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20198_7_lanes_dupsFlagged.bam	SRR1168051	@dbgap@:reads/SRP012000/SRS556959/SRX469727/SRR1168051/SRR1168051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASLZE-41A-01D.fusion.vcf	3						
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-01D	DNA	EFO	SRS556959	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-01D A20198 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20198	SRX469727		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASLZE-41A-01D A20198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20198_7_lanes_dupsFlagged.bam	SRR1168051	@dbgap@:reads/SRP012000/SRS556959/SRX469727/SRR1168051/SRR1168051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASLZE-41A-01D.indel.vcf	3						
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-01D	DNA	EFO	SRS556959	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-01D A20198 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20198	SRX469727		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASLZE-41A-01D A20198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20198_7_lanes_dupsFlagged.bam	SRR1168051	@dbgap@:reads/SRP012000/SRS556959/SRX469727/SRR1168051/SRR1168051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASLZE-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASLZE-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-01D	DNA	EFO	SRS556959	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-01D A20198 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20198	SRX469727		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASLZE-41A-01D A20198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20198_7_lanes_dupsFlagged.bam	SRR1168051	@dbgap@:reads/SRP012000/SRS556959/SRX469727/SRR1168051/SRR1168051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-01D	DNA	EFO	SRS556959	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-01D A20198 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20198	SRX469727		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PASLZE-41A-01D A20198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20198_7_lanes_dupsFlagged.bam	SRR1168051	@dbgap@:reads/SRP012000/SRS556959/SRX469727/SRR1168051/SRR1168051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASLZE-41A-01D_TARGET-21-PASLZE-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01D	DNA	EFO	SRS556977	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01D A20148 library	PAIRED	GENOMIC	WGS	RANDOM	265	A20148	SRX469745		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASNKZ-09A-01D A20148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20148_6_lanes_dupsFlagged.bam	SRR1168034	@dbgap@:reads/SRP012000/SRS556977/SRX469745/SRR1168034/SRR1168034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASNKZ-09A-01D.fusion.vcf	3						
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01D	DNA	EFO	SRS556977	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01D A20148 library	PAIRED	GENOMIC	WGS	RANDOM	265	A20148	SRX469745		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASNKZ-09A-01D A20148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20148_6_lanes_dupsFlagged.bam	SRR1168034	@dbgap@:reads/SRP012000/SRS556977/SRX469745/SRR1168034/SRR1168034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASNKZ-09A-01D.indel.vcf	3						
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01D	DNA	EFO	SRS556977	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01D A20148 library	PAIRED	GENOMIC	WGS	RANDOM	265	A20148	SRX469745		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASNKZ-09A-01D A20148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20148_6_lanes_dupsFlagged.bam	SRR1168034	@dbgap@:reads/SRP012000/SRS556977/SRX469745/SRR1168034/SRR1168034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASNKZ-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASNKZ-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01D	DNA	EFO	SRS556977	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01D A20148 library	PAIRED	GENOMIC	WGS	RANDOM	265	A20148	SRX469745		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASNKZ-09A-01D A20148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20148_6_lanes_dupsFlagged.bam	SRR1168034	@dbgap@:reads/SRP012000/SRS556977/SRX469745/SRR1168034/SRR1168034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01D	DNA	EFO	SRS556977	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01D A20148 library	PAIRED	GENOMIC	WGS	RANDOM	265	A20148	SRX469745		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASNKZ-09A-01D A20148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20148_6_lanes_dupsFlagged.bam	SRR1168034	@dbgap@:reads/SRP012000/SRS556977/SRX469745/SRR1168034/SRR1168034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASNKZ-15A-01D.fusion.vcf	3						
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASNKZ-15A-01D.indel.vcf	3						
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASNKZ-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASNKZ-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-09A-01D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-15A-01D	DNA	EFO	SRS556971	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-15A-01D A20185 library	PAIRED	GENOMIC	WGS	RANDOM	356	A20185	SRX469739		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASNKZ-15A-01D A20185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20185_3_lanes_dupsFlagged.bam	SRR1168085	@dbgap@:reads/SRP012000/SRS556971/SRX469739/SRR1168085/SRR1168085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02D	DNA	EFO	SRS556966	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02D A20149 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20149	SRX469734		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASNKZ-41A-02D A20149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20149_3_lanes_dupsFlagged.bam	SRR1168045	@dbgap@:reads/SRP012000/SRS556966/SRX469734/SRR1168045/SRR1168045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASNKZ-41A-02D.fusion.vcf	3						
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02D	DNA	EFO	SRS556966	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02D A20149 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20149	SRX469734		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASNKZ-41A-02D A20149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20149_3_lanes_dupsFlagged.bam	SRR1168045	@dbgap@:reads/SRP012000/SRS556966/SRX469734/SRR1168045/SRR1168045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASNKZ-41A-02D.indel.vcf	3						
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02D	DNA	EFO	SRS556966	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02D A20149 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20149	SRX469734		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASNKZ-41A-02D A20149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20149_3_lanes_dupsFlagged.bam	SRR1168045	@dbgap@:reads/SRP012000/SRS556966/SRX469734/SRR1168045/SRR1168045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASNKZ-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASNKZ-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02D	DNA	EFO	SRS556966	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02D A20149 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20149	SRX469734		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASNKZ-41A-02D A20149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20149_3_lanes_dupsFlagged.bam	SRR1168045	@dbgap@:reads/SRP012000/SRS556966/SRX469734/SRR1168045/SRR1168045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02D	DNA	EFO	SRS556966	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02D A20149 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20149	SRX469734		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASNKZ-41A-02D A20149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20149_3_lanes_dupsFlagged.bam	SRR1168045	@dbgap@:reads/SRP012000/SRS556966/SRX469734/SRR1168045/SRR1168045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASNKZ-41A-02D_TARGET-21-PASNKZ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01D	DNA	EFO	SRS556975	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01D A20114 library	PAIRED	GENOMIC	WGS	RANDOM	262	A20114	SRX469743		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASSLT-09A-01D A20114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20114_3_lanes_dupsFlagged.bam	SRR1168073	@dbgap@:reads/SRP012000/SRS556975/SRX469743/SRR1168073/SRR1168073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASSLT-09A-01D.fusion.vcf	3						
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01D	DNA	EFO	SRS556975	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01D A20114 library	PAIRED	GENOMIC	WGS	RANDOM	262	A20114	SRX469743		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASSLT-09A-01D A20114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20114_3_lanes_dupsFlagged.bam	SRR1168073	@dbgap@:reads/SRP012000/SRS556975/SRX469743/SRR1168073/SRR1168073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASSLT-09A-01D.indel.vcf	3						
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01D	DNA	EFO	SRS556975	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01D A20114 library	PAIRED	GENOMIC	WGS	RANDOM	262	A20114	SRX469743		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASSLT-09A-01D A20114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20114_3_lanes_dupsFlagged.bam	SRR1168073	@dbgap@:reads/SRP012000/SRS556975/SRX469743/SRR1168073/SRR1168073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASSLT-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASSLT-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01D	DNA	EFO	SRS556975	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01D A20114 library	PAIRED	GENOMIC	WGS	RANDOM	262	A20114	SRX469743		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASSLT-09A-01D A20114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20114_3_lanes_dupsFlagged.bam	SRR1168073	@dbgap@:reads/SRP012000/SRS556975/SRX469743/SRR1168073/SRR1168073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01D	DNA	EFO	SRS556975	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01D A20114 library	PAIRED	GENOMIC	WGS	RANDOM	262	A20114	SRX469743		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASSLT-09A-01D A20114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20114_3_lanes_dupsFlagged.bam	SRR1168073	@dbgap@:reads/SRP012000/SRS556975/SRX469743/SRR1168073/SRR1168073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASSLT-15A-01D.fusion.vcf	3						
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASSLT-15A-01D.indel.vcf	3						
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASSLT-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASSLT-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-09A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-15A-01D	DNA	EFO	SRS557042	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-15A-01D A20168 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20168	SRX469810		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASSLT-15A-01D A20168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20168_3_lanes_dupsFlagged.bam	SRR1168055	@dbgap@:reads/SRP012000/SRS557042/SRX469810/SRR1168055/SRR1168055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-01D	DNA	EFO	SRS557027	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-01D A20115 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20115	SRX469795		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASSLT-41A-01D A20115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20115_5_lanes_dupsFlagged.bam	SRR1168037	@dbgap@:reads/SRP012000/SRS557027/SRX469795/SRR1168037/SRR1168037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASSLT-41A-01D.fusion.vcf	3						
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-01D	DNA	EFO	SRS557027	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-01D A20115 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20115	SRX469795		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASSLT-41A-01D A20115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20115_5_lanes_dupsFlagged.bam	SRR1168037	@dbgap@:reads/SRP012000/SRS557027/SRX469795/SRR1168037/SRR1168037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASSLT-41A-01D.indel.vcf	3						
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-01D	DNA	EFO	SRS557027	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-01D A20115 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20115	SRX469795		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASSLT-41A-01D A20115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20115_5_lanes_dupsFlagged.bam	SRR1168037	@dbgap@:reads/SRP012000/SRS557027/SRX469795/SRR1168037/SRR1168037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASSLT-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASSLT-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-01D	DNA	EFO	SRS557027	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-01D A20115 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20115	SRX469795		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASSLT-41A-01D A20115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20115_5_lanes_dupsFlagged.bam	SRR1168037	@dbgap@:reads/SRP012000/SRS557027/SRX469795/SRR1168037/SRR1168037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-01D	DNA	EFO	SRS557027	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-01D A20115 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20115	SRX469795		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASSLT-41A-01D A20115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20115_5_lanes_dupsFlagged.bam	SRR1168037	@dbgap@:reads/SRP012000/SRS557027/SRX469795/SRR1168037/SRR1168037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASSLT-41A-01D_TARGET-21-PASSLT-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01D	DNA	EFO	SRS556989	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01D A20138 library	PAIRED	GENOMIC	WGS	RANDOM	301	A20138	SRX469757		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01D A20138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20138_5_lanes_dupsFlagged.bam	SRR1168081	@dbgap@:reads/SRP012000/SRS556989/SRX469757/SRR1168081/SRR1168081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASTZK-09A-01D.fusion.vcf	3						
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01D	DNA	EFO	SRS556989	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01D A20138 library	PAIRED	GENOMIC	WGS	RANDOM	301	A20138	SRX469757		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01D A20138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20138_5_lanes_dupsFlagged.bam	SRR1168081	@dbgap@:reads/SRP012000/SRS556989/SRX469757/SRR1168081/SRR1168081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASTZK-09A-01D.indel.vcf	3						
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01D	DNA	EFO	SRS556989	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01D A20138 library	PAIRED	GENOMIC	WGS	RANDOM	301	A20138	SRX469757		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01D A20138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20138_5_lanes_dupsFlagged.bam	SRR1168081	@dbgap@:reads/SRP012000/SRS556989/SRX469757/SRR1168081/SRR1168081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASTZK-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASTZK-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01D	DNA	EFO	SRS556989	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01D A20138 library	PAIRED	GENOMIC	WGS	RANDOM	301	A20138	SRX469757		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01D A20138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20138_5_lanes_dupsFlagged.bam	SRR1168081	@dbgap@:reads/SRP012000/SRS556989/SRX469757/SRR1168081/SRR1168081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01D	DNA	EFO	SRS556989	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01D A20138 library	PAIRED	GENOMIC	WGS	RANDOM	301	A20138	SRX469757		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01D A20138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20138_5_lanes_dupsFlagged.bam	SRR1168081	@dbgap@:reads/SRP012000/SRS556989/SRX469757/SRR1168081/SRR1168081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASTZK-15A-01D.fusion.vcf	3						
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASTZK-15A-01D.indel.vcf	3						
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASTZK-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASTZK-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-09A-01D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-15A-01D	DNA	EFO	SRS556987	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-15A-01D A20180 library	PAIRED	GENOMIC	WGS	RANDOM	260	A20180	SRX469755		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASTZK-15A-01D A20180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20180_3_lanes_dupsFlagged.bam	SRR1168077	@dbgap@:reads/SRP012000/SRS556987/SRX469755/SRR1168077/SRR1168077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03D	DNA	EFO	SRS556986	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03D A20139 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20139	SRX469754		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-41A-03D A20139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20139_7_lanes_dupsFlagged.bam	SRR1168046	@dbgap@:reads/SRP012000/SRS556986/SRX469754/SRR1168046/SRR1168046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASTZK-41A-03D.fusion.vcf	3						
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03D	DNA	EFO	SRS556986	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03D A20139 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20139	SRX469754		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-41A-03D A20139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20139_7_lanes_dupsFlagged.bam	SRR1168046	@dbgap@:reads/SRP012000/SRS556986/SRX469754/SRR1168046/SRR1168046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASTZK-41A-03D.indel.vcf	3						
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03D	DNA	EFO	SRS556986	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03D A20139 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20139	SRX469754		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-41A-03D A20139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20139_7_lanes_dupsFlagged.bam	SRR1168046	@dbgap@:reads/SRP012000/SRS556986/SRX469754/SRR1168046/SRR1168046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASTZK-41A-03D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASTZK-41A-03D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03D	DNA	EFO	SRS556986	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03D A20139 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20139	SRX469754		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-41A-03D A20139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20139_7_lanes_dupsFlagged.bam	SRR1168046	@dbgap@:reads/SRP012000/SRS556986/SRX469754/SRR1168046/SRR1168046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03D	DNA	EFO	SRS556986	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03D A20139 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20139	SRX469754		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-41A-03D A20139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20139_7_lanes_dupsFlagged.bam	SRR1168046	@dbgap@:reads/SRP012000/SRS556986/SRX469754/SRR1168046/SRR1168046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASTZK-41A-03D_TARGET-21-PASTZK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01D	DNA	EFO	SRS556969	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01D A20163 library	PAIRED	GENOMIC	WGS	RANDOM	272	A20163	SRX469737		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-09A-01D A20163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20163_5_lanes_dupsFlagged.bam	SRR1168043	@dbgap@:reads/SRP012000/SRS556969/SRX469737/SRR1168043/SRR1168043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASVJS-09A-01D.fusion.vcf	3						
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01D	DNA	EFO	SRS556969	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01D A20163 library	PAIRED	GENOMIC	WGS	RANDOM	272	A20163	SRX469737		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-09A-01D A20163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20163_5_lanes_dupsFlagged.bam	SRR1168043	@dbgap@:reads/SRP012000/SRS556969/SRX469737/SRR1168043/SRR1168043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASVJS-09A-01D.indel.vcf	3						
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01D	DNA	EFO	SRS556969	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01D A20163 library	PAIRED	GENOMIC	WGS	RANDOM	272	A20163	SRX469737		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-09A-01D A20163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20163_5_lanes_dupsFlagged.bam	SRR1168043	@dbgap@:reads/SRP012000/SRS556969/SRX469737/SRR1168043/SRR1168043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASVJS-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASVJS-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01D	DNA	EFO	SRS556969	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01D A20163 library	PAIRED	GENOMIC	WGS	RANDOM	272	A20163	SRX469737		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-09A-01D A20163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20163_5_lanes_dupsFlagged.bam	SRR1168043	@dbgap@:reads/SRP012000/SRS556969/SRX469737/SRR1168043/SRR1168043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01D	DNA	EFO	SRS556969	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01D A20163 library	PAIRED	GENOMIC	WGS	RANDOM	272	A20163	SRX469737		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-09A-01D A20163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20163_5_lanes_dupsFlagged.bam	SRR1168043	@dbgap@:reads/SRP012000/SRS556969/SRX469737/SRR1168043/SRR1168043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASVJS-15A-01D.fusion.vcf	3						
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASVJS-15A-01D.indel.vcf	3						
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASVJS-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASVJS-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-09A-01D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-15A-01D	DNA	EFO	SRS557030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-15A-01D A20194 library	PAIRED	GENOMIC	WGS	RANDOM	289	A20194	SRX469798		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASVJS-15A-01D A20194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20194_3_lanes_dupsFlagged.bam	SRR1168080	@dbgap@:reads/SRP012000/SRS557030/SRX469798/SRR1168080/SRR1168080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02D	DNA	EFO	SRS556980	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02D A20164 library	PAIRED	GENOMIC	WGS	RANDOM	281	A20164	SRX469748		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PASVJS-41A-02D A20164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20164_6_lanes_dupsFlagged.bam	SRR1168044	@dbgap@:reads/SRP012000/SRS556980/SRX469748/SRR1168044/SRR1168044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASVJS-41A-02D.fusion.vcf	3						
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02D	DNA	EFO	SRS556980	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02D A20164 library	PAIRED	GENOMIC	WGS	RANDOM	281	A20164	SRX469748		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PASVJS-41A-02D A20164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20164_6_lanes_dupsFlagged.bam	SRR1168044	@dbgap@:reads/SRP012000/SRS556980/SRX469748/SRR1168044/SRR1168044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASVJS-41A-02D.indel.vcf	3						
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02D	DNA	EFO	SRS556980	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02D A20164 library	PAIRED	GENOMIC	WGS	RANDOM	281	A20164	SRX469748		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PASVJS-41A-02D A20164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20164_6_lanes_dupsFlagged.bam	SRR1168044	@dbgap@:reads/SRP012000/SRS556980/SRX469748/SRR1168044/SRR1168044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASVJS-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASVJS-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02D	DNA	EFO	SRS556980	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02D A20164 library	PAIRED	GENOMIC	WGS	RANDOM	281	A20164	SRX469748		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PASVJS-41A-02D A20164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20164_6_lanes_dupsFlagged.bam	SRR1168044	@dbgap@:reads/SRP012000/SRS556980/SRX469748/SRR1168044/SRR1168044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02D	DNA	EFO	SRS556980	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02D A20164 library	PAIRED	GENOMIC	WGS	RANDOM	281	A20164	SRX469748		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-06	TARGET-21-PASVJS-41A-02D A20164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20164_6_lanes_dupsFlagged.bam	SRR1168044	@dbgap@:reads/SRP012000/SRS556980/SRX469748/SRR1168044/SRR1168044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASVJS-41A-02D_TARGET-21-PASVJS-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01D	DNA	EFO	SRS556976	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01D A20120 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20120	SRX469744		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASYEJ-09A-01D A20120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20120_5_lanes_dupsFlagged.bam	SRR1168101	@dbgap@:reads/SRP012000/SRS556976/SRX469744/SRR1168101/SRR1168101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYEJ-09A-01D.fusion.vcf	3						
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01D	DNA	EFO	SRS556976	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01D A20120 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20120	SRX469744		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASYEJ-09A-01D A20120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20120_5_lanes_dupsFlagged.bam	SRR1168101	@dbgap@:reads/SRP012000/SRS556976/SRX469744/SRR1168101/SRR1168101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYEJ-09A-01D.indel.vcf	3						
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01D	DNA	EFO	SRS556976	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01D A20120 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20120	SRX469744		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASYEJ-09A-01D A20120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20120_5_lanes_dupsFlagged.bam	SRR1168101	@dbgap@:reads/SRP012000/SRS556976/SRX469744/SRR1168101/SRR1168101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASYEJ-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASYEJ-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01D	DNA	EFO	SRS556976	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01D A20120 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20120	SRX469744		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASYEJ-09A-01D A20120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20120_5_lanes_dupsFlagged.bam	SRR1168101	@dbgap@:reads/SRP012000/SRS556976/SRX469744/SRR1168101/SRR1168101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01D	DNA	EFO	SRS556976	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01D A20120 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20120	SRX469744		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASYEJ-09A-01D A20120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20120_5_lanes_dupsFlagged.bam	SRR1168101	@dbgap@:reads/SRP012000/SRS556976/SRX469744/SRR1168101/SRR1168101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYEJ-15A-01D.fusion.vcf	3						
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYEJ-15A-01D.indel.vcf	3						
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASYEJ-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASYEJ-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-09A-01D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-15A-01D	DNA	EFO	SRS557028	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-15A-01D A20171 library	PAIRED	GENOMIC	WGS	RANDOM	268	A20171	SRX469796		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PASYEJ-15A-01D A20171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20171_3_lanes_dupsFlagged.bam	SRR1168020	@dbgap@:reads/SRP012000/SRS557028/SRX469796/SRR1168020/SRR1168020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-02D	DNA	EFO	SRS556999	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-02D A20121 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20121	SRX469767		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASYEJ-41A-02D A20121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20121_7_lanes_dupsFlagged.bam	SRR1168019	@dbgap@:reads/SRP012000/SRS556999/SRX469767/SRR1168019/SRR1168019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYEJ-41A-02D.fusion.vcf	3						
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-02D	DNA	EFO	SRS556999	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-02D A20121 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20121	SRX469767		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASYEJ-41A-02D A20121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20121_7_lanes_dupsFlagged.bam	SRR1168019	@dbgap@:reads/SRP012000/SRS556999/SRX469767/SRR1168019/SRR1168019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYEJ-41A-02D.indel.vcf	3						
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-02D	DNA	EFO	SRS556999	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-02D A20121 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20121	SRX469767		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASYEJ-41A-02D A20121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20121_7_lanes_dupsFlagged.bam	SRR1168019	@dbgap@:reads/SRP012000/SRS556999/SRX469767/SRR1168019/SRR1168019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASYEJ-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASYEJ-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-02D	DNA	EFO	SRS556999	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-02D A20121 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20121	SRX469767		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASYEJ-41A-02D A20121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20121_7_lanes_dupsFlagged.bam	SRR1168019	@dbgap@:reads/SRP012000/SRS556999/SRX469767/SRR1168019/SRR1168019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-02D	DNA	EFO	SRS556999	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-02D A20121 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20121	SRX469767		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PASYEJ-41A-02D A20121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20121_7_lanes_dupsFlagged.bam	SRR1168019	@dbgap@:reads/SRP012000/SRS556999/SRX469767/SRR1168019/SRR1168019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYEJ-41A-02D_TARGET-21-PASYEJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01D	DNA	EFO	SRS556991	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01D A20155 library	PAIRED	GENOMIC	WGS	RANDOM	280	A20155	SRX469759		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-09A-01D A20155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20155_7_lanes_dupsFlagged.bam	SRR1168052	@dbgap@:reads/SRP012000/SRS556991/SRX469759/SRR1168052/SRR1168052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYWA-09A-01D.fusion.vcf	3						
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01D	DNA	EFO	SRS556991	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01D A20155 library	PAIRED	GENOMIC	WGS	RANDOM	280	A20155	SRX469759		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-09A-01D A20155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20155_7_lanes_dupsFlagged.bam	SRR1168052	@dbgap@:reads/SRP012000/SRS556991/SRX469759/SRR1168052/SRR1168052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYWA-09A-01D.indel.vcf	3						
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01D	DNA	EFO	SRS556991	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01D A20155 library	PAIRED	GENOMIC	WGS	RANDOM	280	A20155	SRX469759		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-09A-01D A20155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20155_7_lanes_dupsFlagged.bam	SRR1168052	@dbgap@:reads/SRP012000/SRS556991/SRX469759/SRR1168052/SRR1168052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASYWA-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASYWA-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01D	DNA	EFO	SRS556991	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01D A20155 library	PAIRED	GENOMIC	WGS	RANDOM	280	A20155	SRX469759		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-09A-01D A20155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20155_7_lanes_dupsFlagged.bam	SRR1168052	@dbgap@:reads/SRP012000/SRS556991/SRX469759/SRR1168052/SRR1168052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01D	DNA	EFO	SRS556991	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01D A20155 library	PAIRED	GENOMIC	WGS	RANDOM	280	A20155	SRX469759		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-09A-01D A20155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20155_7_lanes_dupsFlagged.bam	SRR1168052	@dbgap@:reads/SRP012000/SRS556991/SRX469759/SRR1168052/SRR1168052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYWA-15A-01D.fusion.vcf	3						
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYWA-15A-01D.indel.vcf	3						
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASYWA-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASYWA-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-09A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-15A-01D	DNA	EFO	SRS556955	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-15A-01D A20190 library	PAIRED	GENOMIC	WGS	RANDOM	303	A20190	SRX469723		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PASYWA-15A-01D A20190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20190_3_lanes_dupsFlagged.bam	SRR1168022	@dbgap@:reads/SRP012000/SRS556955/SRX469723/SRR1168022/SRR1168022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01D	DNA	EFO	SRS557020	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01D A20156 library	PAIRED	GENOMIC	WGS	RANDOM	262	A20156	SRX469788		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASYWA-41A-01D A20156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20156_4_lanes_dupsFlagged.bam	SRR1168094	@dbgap@:reads/SRP012000/SRS557020/SRX469788/SRR1168094/SRR1168094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYWA-41A-01D.fusion.vcf	3						
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01D	DNA	EFO	SRS557020	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01D A20156 library	PAIRED	GENOMIC	WGS	RANDOM	262	A20156	SRX469788		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASYWA-41A-01D A20156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20156_4_lanes_dupsFlagged.bam	SRR1168094	@dbgap@:reads/SRP012000/SRS557020/SRX469788/SRR1168094/SRR1168094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PASYWA-41A-01D.indel.vcf	3						
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01D	DNA	EFO	SRS557020	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01D A20156 library	PAIRED	GENOMIC	WGS	RANDOM	262	A20156	SRX469788		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASYWA-41A-01D A20156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20156_4_lanes_dupsFlagged.bam	SRR1168094	@dbgap@:reads/SRP012000/SRS557020/SRX469788/SRR1168094/SRR1168094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PASYWA-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PASYWA-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01D	DNA	EFO	SRS557020	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01D A20156 library	PAIRED	GENOMIC	WGS	RANDOM	262	A20156	SRX469788		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASYWA-41A-01D A20156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20156_4_lanes_dupsFlagged.bam	SRR1168094	@dbgap@:reads/SRP012000/SRS557020/SRX469788/SRR1168094/SRR1168094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01D	DNA	EFO	SRS557020	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01D A20156 library	PAIRED	GENOMIC	WGS	RANDOM	262	A20156	SRX469788		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-30	TARGET-21-PASYWA-41A-01D A20156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20156_4_lanes_dupsFlagged.bam	SRR1168094	@dbgap@:reads/SRP012000/SRS557020/SRX469788/SRR1168094/SRR1168094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PASYWA-41A-01D_TARGET-21-PASYWA-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01D	DNA	EFO	SRS557000	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01D A20128 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20128	SRX469768		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATAIJ-09A-01D A20128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20128_3_lanes_dupsFlagged.bam	SRR1168063	@dbgap@:reads/SRP012000/SRS557000/SRX469768/SRR1168063/SRR1168063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATAIJ-09A-01D.fusion.vcf	3						
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01D	DNA	EFO	SRS557000	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01D A20128 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20128	SRX469768		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATAIJ-09A-01D A20128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20128_3_lanes_dupsFlagged.bam	SRR1168063	@dbgap@:reads/SRP012000/SRS557000/SRX469768/SRR1168063/SRR1168063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATAIJ-09A-01D.indel.vcf	3						
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01D	DNA	EFO	SRS557000	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01D A20128 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20128	SRX469768		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATAIJ-09A-01D A20128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20128_3_lanes_dupsFlagged.bam	SRR1168063	@dbgap@:reads/SRP012000/SRS557000/SRX469768/SRR1168063/SRR1168063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATAIJ-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATAIJ-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01D	DNA	EFO	SRS557000	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01D A20128 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20128	SRX469768		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATAIJ-09A-01D A20128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20128_3_lanes_dupsFlagged.bam	SRR1168063	@dbgap@:reads/SRP012000/SRS557000/SRX469768/SRR1168063/SRR1168063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01D	DNA	EFO	SRS557000	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01D A20128 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20128	SRX469768		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATAIJ-09A-01D A20128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20128_3_lanes_dupsFlagged.bam	SRR1168063	@dbgap@:reads/SRP012000/SRS557000/SRX469768/SRR1168063/SRR1168063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATAIJ-15A-01D.fusion.vcf	3						
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATAIJ-15A-01D.indel.vcf	3						
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATAIJ-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATAIJ-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-09A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-15A-01D	DNA	EFO	SRS556970	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-15A-01D A20175 library	PAIRED	GENOMIC	WGS	RANDOM	331	A20175	SRX469738		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATAIJ-15A-01D A20175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20175_3_lanes_dupsFlagged.bam	SRR1168030	@dbgap@:reads/SRP012000/SRS556970/SRX469738/SRR1168030/SRR1168030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01D	DNA	EFO	SRS556961	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01D A20129 library	PAIRED	GENOMIC	WGS	RANDOM	324	A20129	SRX469729		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATAIJ-42A-01D A20129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20129_7_lanes_dupsFlagged.bam	SRR1168075	@dbgap@:reads/SRP012000/SRS556961/SRX469729/SRR1168075/SRR1168075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATAIJ-42A-01D.fusion.vcf	3						
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01D	DNA	EFO	SRS556961	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01D A20129 library	PAIRED	GENOMIC	WGS	RANDOM	324	A20129	SRX469729		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATAIJ-42A-01D A20129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20129_7_lanes_dupsFlagged.bam	SRR1168075	@dbgap@:reads/SRP012000/SRS556961/SRX469729/SRR1168075/SRR1168075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATAIJ-42A-01D.indel.vcf	3						
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01D	DNA	EFO	SRS556961	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01D A20129 library	PAIRED	GENOMIC	WGS	RANDOM	324	A20129	SRX469729		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATAIJ-42A-01D A20129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20129_7_lanes_dupsFlagged.bam	SRR1168075	@dbgap@:reads/SRP012000/SRS556961/SRX469729/SRR1168075/SRR1168075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATAIJ-42A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATAIJ-42A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01D	DNA	EFO	SRS556961	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01D A20129 library	PAIRED	GENOMIC	WGS	RANDOM	324	A20129	SRX469729		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATAIJ-42A-01D A20129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20129_7_lanes_dupsFlagged.bam	SRR1168075	@dbgap@:reads/SRP012000/SRS556961/SRX469729/SRR1168075/SRR1168075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01D	DNA	EFO	SRS556961	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01D A20129 library	PAIRED	GENOMIC	WGS	RANDOM	324	A20129	SRX469729		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATAIJ-42A-01D A20129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20129_7_lanes_dupsFlagged.bam	SRR1168075	@dbgap@:reads/SRP012000/SRS556961/SRX469729/SRR1168075/SRR1168075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATAIJ-42A-01D_TARGET-21-PATAIJ-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01D	DNA	EFO	SRS556983	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01D A20167 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20167	SRX469751		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATHIU-09A-01D A20167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20167_7_lanes_dupsFlagged.bam	SRR1168098	@dbgap@:reads/SRP012000/SRS556983/SRX469751/SRR1168098/SRR1168098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATHIU-09A-01D.fusion.vcf	3						
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01D	DNA	EFO	SRS556983	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01D A20167 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20167	SRX469751		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATHIU-09A-01D A20167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20167_7_lanes_dupsFlagged.bam	SRR1168098	@dbgap@:reads/SRP012000/SRS556983/SRX469751/SRR1168098/SRR1168098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATHIU-09A-01D.indel.vcf	3						
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01D	DNA	EFO	SRS556983	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01D A20167 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20167	SRX469751		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATHIU-09A-01D A20167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20167_7_lanes_dupsFlagged.bam	SRR1168098	@dbgap@:reads/SRP012000/SRS556983/SRX469751/SRR1168098/SRR1168098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATHIU-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATHIU-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01D	DNA	EFO	SRS556983	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01D A20167 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20167	SRX469751		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATHIU-09A-01D A20167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20167_7_lanes_dupsFlagged.bam	SRR1168098	@dbgap@:reads/SRP012000/SRS556983/SRX469751/SRR1168098/SRR1168098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01D	DNA	EFO	SRS556983	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01D A20167 library	PAIRED	GENOMIC	WGS	RANDOM	340	A20167	SRX469751		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATHIU-09A-01D A20167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20167_7_lanes_dupsFlagged.bam	SRR1168098	@dbgap@:reads/SRP012000/SRS556983/SRX469751/SRR1168098/SRR1168098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATHIU-15A-01D.fusion.vcf	3						
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATHIU-15A-01D.indel.vcf	3						
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATHIU-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATHIU-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-09A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-15A-01D	DNA	EFO	SRS556972	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-15A-01D A20196 library	PAIRED	GENOMIC	WGS	RANDOM	254	A20196	SRX469740		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATHIU-15A-01D A20196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20196_3_lanes_dupsFlagged.bam	SRR1168033	@dbgap@:reads/SRP012000/SRS556972/SRX469740/SRR1168033/SRR1168033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-41A-01D	DNA	EFO	SRS557004	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-41A-01D A20200 library	PAIRED	GENOMIC	WGS	RANDOM	322	A20200	SRX469772		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PATHIU-41A-01D A20200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20200_7_lanes_dupsFlagged.bam	SRR1168031	@dbgap@:reads/SRP012000/SRS557004/SRX469772/SRR1168031/SRR1168031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATHIU-41A-01D.fusion.vcf	3						
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-41A-01D	DNA	EFO	SRS557004	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-41A-01D A20200 library	PAIRED	GENOMIC	WGS	RANDOM	322	A20200	SRX469772		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PATHIU-41A-01D A20200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20200_7_lanes_dupsFlagged.bam	SRR1168031	@dbgap@:reads/SRP012000/SRS557004/SRX469772/SRR1168031/SRR1168031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATHIU-41A-01D.indel.vcf	3						
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-41A-01D	DNA	EFO	SRS557004	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-41A-01D A20200 library	PAIRED	GENOMIC	WGS	RANDOM	322	A20200	SRX469772		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PATHIU-41A-01D A20200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20200_7_lanes_dupsFlagged.bam	SRR1168031	@dbgap@:reads/SRP012000/SRS557004/SRX469772/SRR1168031/SRR1168031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATHIU-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATHIU-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-41A-01D	DNA	EFO	SRS557004	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-41A-01D A20200 library	PAIRED	GENOMIC	WGS	RANDOM	322	A20200	SRX469772		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PATHIU-41A-01D A20200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20200_7_lanes_dupsFlagged.bam	SRR1168031	@dbgap@:reads/SRP012000/SRS557004/SRX469772/SRR1168031/SRR1168031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-41A-01D	DNA	EFO	SRS557004	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-41A-01D A20200 library	PAIRED	GENOMIC	WGS	RANDOM	322	A20200	SRX469772		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PATHIU-41A-01D A20200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20200_7_lanes_dupsFlagged.bam	SRR1168031	@dbgap@:reads/SRP012000/SRS557004/SRX469772/SRR1168031/SRR1168031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATHIU-41A-01D_TARGET-21-PATHIU-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01D	DNA	EFO	SRS557002	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01D A20130 library	PAIRED	GENOMIC	WGS	RANDOM	256	A20130	SRX469770		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATISD-09A-01D A20130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20130_3_lanes_dupsFlagged.bam	SRR1168084	@dbgap@:reads/SRP012000/SRS557002/SRX469770/SRR1168084/SRR1168084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATISD-09A-01D.fusion.vcf	3						
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01D	DNA	EFO	SRS557002	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01D A20130 library	PAIRED	GENOMIC	WGS	RANDOM	256	A20130	SRX469770		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATISD-09A-01D A20130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20130_3_lanes_dupsFlagged.bam	SRR1168084	@dbgap@:reads/SRP012000/SRS557002/SRX469770/SRR1168084/SRR1168084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATISD-09A-01D.indel.vcf	3						
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01D	DNA	EFO	SRS557002	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01D A20130 library	PAIRED	GENOMIC	WGS	RANDOM	256	A20130	SRX469770		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATISD-09A-01D A20130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20130_3_lanes_dupsFlagged.bam	SRR1168084	@dbgap@:reads/SRP012000/SRS557002/SRX469770/SRR1168084/SRR1168084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATISD-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATISD-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01D	DNA	EFO	SRS557002	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01D A20130 library	PAIRED	GENOMIC	WGS	RANDOM	256	A20130	SRX469770		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATISD-09A-01D A20130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20130_3_lanes_dupsFlagged.bam	SRR1168084	@dbgap@:reads/SRP012000/SRS557002/SRX469770/SRR1168084/SRR1168084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01D	DNA	EFO	SRS557002	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01D A20130 library	PAIRED	GENOMIC	WGS	RANDOM	256	A20130	SRX469770		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATISD-09A-01D A20130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20130_3_lanes_dupsFlagged.bam	SRR1168084	@dbgap@:reads/SRP012000/SRS557002/SRX469770/SRR1168084/SRR1168084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATISD-15A-01D.fusion.vcf	3						
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATISD-15A-01D.indel.vcf	3						
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATISD-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATISD-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-09A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-15A-01D	DNA	EFO	SRS557018	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-15A-01D A20176 library	PAIRED	GENOMIC	WGS	RANDOM	315	A20176	SRX469786		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-21-PATISD-15A-01D A20176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20176_4_lanes_dupsFlagged.bam	SRR1168105	@dbgap@:reads/SRP012000/SRS557018/SRX469786/SRR1168105/SRR1168105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01D	DNA	EFO	SRS557015	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01D A20131 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20131	SRX469783		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATISD-41A-01D A20131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20131_3_lanes_dupsFlagged.bam	SRR1168050	@dbgap@:reads/SRP012000/SRS557015/SRX469783/SRR1168050/SRR1168050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATISD-41A-01D.fusion.vcf	3						
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01D	DNA	EFO	SRS557015	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01D A20131 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20131	SRX469783		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATISD-41A-01D A20131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20131_3_lanes_dupsFlagged.bam	SRR1168050	@dbgap@:reads/SRP012000/SRS557015/SRX469783/SRR1168050/SRR1168050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATISD-41A-01D.indel.vcf	3						
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01D	DNA	EFO	SRS557015	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01D A20131 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20131	SRX469783		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATISD-41A-01D A20131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20131_3_lanes_dupsFlagged.bam	SRR1168050	@dbgap@:reads/SRP012000/SRS557015/SRX469783/SRR1168050/SRR1168050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATISD-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATISD-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01D	DNA	EFO	SRS557015	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01D A20131 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20131	SRX469783		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATISD-41A-01D A20131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20131_3_lanes_dupsFlagged.bam	SRR1168050	@dbgap@:reads/SRP012000/SRS557015/SRX469783/SRR1168050/SRR1168050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01D	DNA	EFO	SRS557015	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01D A20131 library	PAIRED	GENOMIC	WGS	RANDOM	295	A20131	SRX469783		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-25	TARGET-21-PATISD-41A-01D A20131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20131_3_lanes_dupsFlagged.bam	SRR1168050	@dbgap@:reads/SRP012000/SRS557015/SRX469783/SRR1168050/SRR1168050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATISD-41A-01D_TARGET-21-PATISD-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01D	DNA	EFO	SRS556994	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01D A20142 library	PAIRED	GENOMIC	WGS	RANDOM	323	A20142	SRX469762		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATJMY-09A-01D A20142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20142_5_lanes_dupsFlagged.bam	SRR1168097	@dbgap@:reads/SRP012000/SRS556994/SRX469762/SRR1168097/SRR1168097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATJMY-09A-01D.fusion.vcf	3						
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01D	DNA	EFO	SRS556994	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01D A20142 library	PAIRED	GENOMIC	WGS	RANDOM	323	A20142	SRX469762		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATJMY-09A-01D A20142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20142_5_lanes_dupsFlagged.bam	SRR1168097	@dbgap@:reads/SRP012000/SRS556994/SRX469762/SRR1168097/SRR1168097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATJMY-09A-01D.indel.vcf	3						
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01D	DNA	EFO	SRS556994	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01D A20142 library	PAIRED	GENOMIC	WGS	RANDOM	323	A20142	SRX469762		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATJMY-09A-01D A20142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20142_5_lanes_dupsFlagged.bam	SRR1168097	@dbgap@:reads/SRP012000/SRS556994/SRX469762/SRR1168097/SRR1168097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATJMY-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATJMY-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01D	DNA	EFO	SRS556994	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01D A20142 library	PAIRED	GENOMIC	WGS	RANDOM	323	A20142	SRX469762		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATJMY-09A-01D A20142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20142_5_lanes_dupsFlagged.bam	SRR1168097	@dbgap@:reads/SRP012000/SRS556994/SRX469762/SRR1168097/SRR1168097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01D	DNA	EFO	SRS556994	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01D A20142 library	PAIRED	GENOMIC	WGS	RANDOM	323	A20142	SRX469762		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-09	TARGET-21-PATJMY-09A-01D A20142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20142_5_lanes_dupsFlagged.bam	SRR1168097	@dbgap@:reads/SRP012000/SRS556994/SRX469762/SRR1168097/SRR1168097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATJMY-15A-01D.fusion.vcf	3						
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATJMY-15A-01D.indel.vcf	3						
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATJMY-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATJMY-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-09A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-15A-01D	DNA	EFO	SRS556988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-15A-01D A20182 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20182	SRX469756		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-15A-01D A20182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20182_3_lanes_dupsFlagged.bam	SRR1168086	@dbgap@:reads/SRP012000/SRS556988/SRX469756/SRR1168086/SRR1168086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01D	DNA	EFO	SRS556960	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01D A20143 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20143	SRX469728		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-41A-01D A20143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20143_7_lanes_dupsFlagged.bam	SRR1168041	@dbgap@:reads/SRP012000/SRS556960/SRX469728/SRR1168041/SRR1168041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATJMY-41A-01D.fusion.vcf	3						
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01D	DNA	EFO	SRS556960	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01D A20143 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20143	SRX469728		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-41A-01D A20143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20143_7_lanes_dupsFlagged.bam	SRR1168041	@dbgap@:reads/SRP012000/SRS556960/SRX469728/SRR1168041/SRR1168041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATJMY-41A-01D.indel.vcf	3						
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01D	DNA	EFO	SRS556960	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01D A20143 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20143	SRX469728		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-41A-01D A20143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20143_7_lanes_dupsFlagged.bam	SRR1168041	@dbgap@:reads/SRP012000/SRS556960/SRX469728/SRR1168041/SRR1168041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATJMY-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATJMY-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01D	DNA	EFO	SRS556960	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01D A20143 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20143	SRX469728		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-41A-01D A20143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20143_7_lanes_dupsFlagged.bam	SRR1168041	@dbgap@:reads/SRP012000/SRS556960/SRX469728/SRR1168041/SRR1168041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01D	DNA	EFO	SRS556960	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01D A20143 library	PAIRED	GENOMIC	WGS	RANDOM	325	A20143	SRX469728		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATJMY-41A-01D A20143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20143_7_lanes_dupsFlagged.bam	SRR1168041	@dbgap@:reads/SRP012000/SRS556960/SRX469728/SRR1168041/SRR1168041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATJMY-41A-01D_TARGET-21-PATJMY-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01D	DNA	EFO	SRS557024	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01D A20118 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20118	SRX469792		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKBK-03A-01D A20118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20118_5_lanes_dupsFlagged.bam	SRR1168058	@dbgap@:reads/SRP012000/SRS557024/SRX469792/SRR1168058/SRR1168058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKBK-03A-01D.fusion.vcf	3						
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01D	DNA	EFO	SRS557024	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01D A20118 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20118	SRX469792		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKBK-03A-01D A20118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20118_5_lanes_dupsFlagged.bam	SRR1168058	@dbgap@:reads/SRP012000/SRS557024/SRX469792/SRR1168058/SRR1168058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKBK-03A-01D.indel.vcf	3						
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01D	DNA	EFO	SRS557024	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01D A20118 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20118	SRX469792		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKBK-03A-01D A20118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20118_5_lanes_dupsFlagged.bam	SRR1168058	@dbgap@:reads/SRP012000/SRS557024/SRX469792/SRR1168058/SRR1168058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATKBK-03A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATKBK-03A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01D	DNA	EFO	SRS557024	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01D A20118 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20118	SRX469792		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKBK-03A-01D A20118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20118_5_lanes_dupsFlagged.bam	SRR1168058	@dbgap@:reads/SRP012000/SRS557024/SRX469792/SRR1168058/SRR1168058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01D	DNA	EFO	SRS557024	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01D A20118 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20118	SRX469792		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKBK-03A-01D A20118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20118_5_lanes_dupsFlagged.bam	SRR1168058	@dbgap@:reads/SRP012000/SRS557024/SRX469792/SRR1168058/SRR1168058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKBK-15A-01D.fusion.vcf	3						
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKBK-15A-01D.indel.vcf	3						
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATKBK-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATKBK-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-03A-01D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-15A-01D	DNA	EFO	SRS557038	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-15A-01D A20170 library	PAIRED	GENOMIC	WGS	RANDOM	296	A20170	SRX469806		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PATKBK-15A-01D A20170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20170_3_lanes_dupsFlagged.bam	SRR1168082	@dbgap@:reads/SRP012000/SRS557038/SRX469806/SRR1168082/SRR1168082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02D	DNA	EFO	SRS556979	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02D A20119 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20119	SRX469747		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKBK-41A-02D A20119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20119_7_lanes_dupsFlagged.bam	SRR1168028	@dbgap@:reads/SRP012000/SRS556979/SRX469747/SRR1168028/SRR1168028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKBK-41A-02D.fusion.vcf	3						
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02D	DNA	EFO	SRS556979	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02D A20119 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20119	SRX469747		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKBK-41A-02D A20119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20119_7_lanes_dupsFlagged.bam	SRR1168028	@dbgap@:reads/SRP012000/SRS556979/SRX469747/SRR1168028/SRR1168028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKBK-41A-02D.indel.vcf	3						
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02D	DNA	EFO	SRS556979	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02D A20119 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20119	SRX469747		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKBK-41A-02D A20119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20119_7_lanes_dupsFlagged.bam	SRR1168028	@dbgap@:reads/SRP012000/SRS556979/SRX469747/SRR1168028/SRR1168028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATKBK-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATKBK-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02D	DNA	EFO	SRS556979	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02D A20119 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20119	SRX469747		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKBK-41A-02D A20119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20119_7_lanes_dupsFlagged.bam	SRR1168028	@dbgap@:reads/SRP012000/SRS556979/SRX469747/SRR1168028/SRR1168028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02D	DNA	EFO	SRS556979	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02D A20119 library	PAIRED	GENOMIC	WGS	RANDOM	305	A20119	SRX469747		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKBK-41A-02D A20119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20119_7_lanes_dupsFlagged.bam	SRR1168028	@dbgap@:reads/SRP012000/SRS556979/SRX469747/SRR1168028/SRR1168028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKBK-41A-02D_TARGET-21-PATKBK-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01D	DNA	EFO	SRS556963	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01D A20122 library	PAIRED	GENOMIC	WGS	RANDOM	265	A20122	SRX469730		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKKJ-09A-01D A20122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20122_5_lanes_dupsFlagged.bam	SRR1168054	@dbgap@:reads/SRP012000/SRS556963/SRX469730/SRR1168054/SRR1168054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKKJ-09A-01D.fusion.vcf	3						
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01D	DNA	EFO	SRS556963	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01D A20122 library	PAIRED	GENOMIC	WGS	RANDOM	265	A20122	SRX469730		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKKJ-09A-01D A20122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20122_5_lanes_dupsFlagged.bam	SRR1168054	@dbgap@:reads/SRP012000/SRS556963/SRX469730/SRR1168054/SRR1168054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKKJ-09A-01D.indel.vcf	3						
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01D	DNA	EFO	SRS556963	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01D A20122 library	PAIRED	GENOMIC	WGS	RANDOM	265	A20122	SRX469730		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKKJ-09A-01D A20122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20122_5_lanes_dupsFlagged.bam	SRR1168054	@dbgap@:reads/SRP012000/SRS556963/SRX469730/SRR1168054/SRR1168054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATKKJ-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATKKJ-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01D	DNA	EFO	SRS556963	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01D A20122 library	PAIRED	GENOMIC	WGS	RANDOM	265	A20122	SRX469730		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKKJ-09A-01D A20122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20122_5_lanes_dupsFlagged.bam	SRR1168054	@dbgap@:reads/SRP012000/SRS556963/SRX469730/SRR1168054/SRR1168054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01D	DNA	EFO	SRS556963	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01D A20122 library	PAIRED	GENOMIC	WGS	RANDOM	265	A20122	SRX469730		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKKJ-09A-01D A20122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20122_5_lanes_dupsFlagged.bam	SRR1168054	@dbgap@:reads/SRP012000/SRS556963/SRX469730/SRR1168054/SRR1168054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKKJ-15A-02D.fusion.vcf	3						
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKKJ-15A-02D.indel.vcf	3						
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATKKJ-15A-02D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATKKJ-15A-02D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-09A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-15A-02D	DNA	EFO	SRS557034	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-15A-02D A21784 library	PAIRED	GENOMIC	WGS	RANDOM	294	A21784	SRX469802		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-07	TARGET-21-PATKKJ-15A-02D A21784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A21784_3_lanes_dupsFlagged.bam	SRR1168036	@dbgap@:reads/SRP012000/SRS557034/SRX469802/SRR1168036/SRR1168036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01D	DNA	EFO	SRS557031	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01D A20123 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20123	SRX469799		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKKJ-41A-01D A20123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20123_5_lanes_dupsFlagged.bam	SRR1168059	@dbgap@:reads/SRP012000/SRS557031/SRX469799/SRR1168059/SRR1168059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKKJ-41A-01D.fusion.vcf	3						
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01D	DNA	EFO	SRS557031	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01D A20123 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20123	SRX469799		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKKJ-41A-01D A20123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20123_5_lanes_dupsFlagged.bam	SRR1168059	@dbgap@:reads/SRP012000/SRS557031/SRX469799/SRR1168059/SRR1168059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKKJ-41A-01D.indel.vcf	3						
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01D	DNA	EFO	SRS557031	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01D A20123 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20123	SRX469799		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKKJ-41A-01D A20123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20123_5_lanes_dupsFlagged.bam	SRR1168059	@dbgap@:reads/SRP012000/SRS557031/SRX469799/SRR1168059/SRR1168059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATKKJ-41A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATKKJ-41A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01D	DNA	EFO	SRS557031	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01D A20123 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20123	SRX469799		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKKJ-41A-01D A20123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20123_5_lanes_dupsFlagged.bam	SRR1168059	@dbgap@:reads/SRP012000/SRS557031/SRX469799/SRR1168059/SRR1168059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01D	DNA	EFO	SRS557031	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01D A20123 library	PAIRED	GENOMIC	WGS	RANDOM	300	A20123	SRX469799		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-01-23	TARGET-21-PATKKJ-41A-01D A20123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20123_5_lanes_dupsFlagged.bam	SRR1168059	@dbgap@:reads/SRP012000/SRS557031/SRX469799/SRR1168059/SRR1168059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKKJ-41A-01D_TARGET-21-PATKKJ-15A-02D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01D	DNA	EFO	SRS557007	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01D A20144 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20144	SRX469775		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-09A-01D A20144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20144_3_lanes_dupsFlagged.bam	SRR1168087	@dbgap@:reads/SRP012000/SRS557007/SRX469775/SRR1168087/SRR1168087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKWH-09A-01D.fusion.vcf	3						
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01D	DNA	EFO	SRS557007	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01D A20144 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20144	SRX469775		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-09A-01D A20144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20144_3_lanes_dupsFlagged.bam	SRR1168087	@dbgap@:reads/SRP012000/SRS557007/SRX469775/SRR1168087/SRR1168087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKWH-09A-01D.indel.vcf	3						
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01D	DNA	EFO	SRS557007	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01D A20144 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20144	SRX469775		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-09A-01D A20144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20144_3_lanes_dupsFlagged.bam	SRR1168087	@dbgap@:reads/SRP012000/SRS557007/SRX469775/SRR1168087/SRR1168087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATKWH-09A-01D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATKWH-09A-01D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01D	DNA	EFO	SRS557007	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01D A20144 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20144	SRX469775		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-09A-01D A20144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20144_3_lanes_dupsFlagged.bam	SRR1168087	@dbgap@:reads/SRP012000/SRS557007/SRX469775/SRR1168087/SRR1168087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01D	DNA	EFO	SRS557007	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01D A20144 library	PAIRED	GENOMIC	WGS	RANDOM	326	A20144	SRX469775		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-09A-01D A20144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20144_3_lanes_dupsFlagged.bam	SRR1168087	@dbgap@:reads/SRP012000/SRS557007/SRX469775/SRR1168087/SRR1168087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKWH-15A-01D.fusion.vcf	3						
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKWH-15A-01D.indel.vcf	3						
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATKWH-15A-01D.dna_normal.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATKWH-15A-01D.format_1.3.dna_normal.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-09A-01D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-15A	organism part	EFO	Bone Marrow	NCIt	"Fibroblasts from Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-15A-01D	DNA	EFO	SRS556962	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-15A-01D A20183 library	PAIRED	GENOMIC	WGS	RANDOM	330	A20183	SRX469731		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-17	TARGET-21-PATKWH-15A-01D A20183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20183_3_lanes_dupsFlagged.bam	SRR1168103	@dbgap@:reads/SRP012000/SRS556962/SRX469731/SRR1168103/SRR1168103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02D	DNA	EFO	SRS557032	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02D A20145 library	PAIRED	GENOMIC	WGS	RANDOM	335	A20145	SRX469800		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PATKWH-41A-02D A20145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20145_7_lanes_dupsFlagged.bam	SRR1168067	@dbgap@:reads/SRP012000/SRS557032/SRX469800/SRR1168067/SRR1168067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKWH-41A-02D.fusion.vcf	3						
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02D	DNA	EFO	SRS557032	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02D A20145 library	PAIRED	GENOMIC	WGS	RANDOM	335	A20145	SRX469800		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PATKWH-41A-02D A20145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20145_7_lanes_dupsFlagged.bam	SRR1168067	@dbgap@:reads/SRP012000/SRS557032/SRX469800/SRR1168067/SRR1168067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01	TARGET-21-PATKWH-41A-02D.indel.vcf	3						
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02D	DNA	EFO	SRS557032	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02D A20145 library	PAIRED	GENOMIC	WGS	RANDOM	335	A20145	SRX469800		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PATKWH-41A-02D A20145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20145_7_lanes_dupsFlagged.bam	SRR1168067	@dbgap@:reads/SRP012000/SRS557032/SRX469800/SRR1168067/SRR1168067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	TARGET-21-PATKWH-41A-02D.dna_tumor.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-21-PATKWH-41A-02D.format_1.3.dna_tumor.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02D	DNA	EFO	SRS557032	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02D A20145 library	PAIRED	GENOMIC	WGS	RANDOM	335	A20145	SRX469800		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PATKWH-41A-02D A20145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20145_7_lanes_dupsFlagged.bam	SRR1168067	@dbgap@:reads/SRP012000/SRS557032/SRX469800/SRR1168067/SRR1168067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.somatic.indel.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02D	DNA	EFO	SRS557032	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02D A20145 library	PAIRED	GENOMIC	WGS	RANDOM	335	A20145	SRX469800		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-18	TARGET-21-PATKWH-41A-02D A20145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A20145_7_lanes_dupsFlagged.bam	SRR1168067	@dbgap@:reads/SRP012000/SRS557032/SRX469800/SRR1168067/SRR1168067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.somatic.snv.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-21-PATKWH-41A-02D_TARGET-21-PATKWH-15A-01D.format_1.1.somatic.maf.txt	3			
